# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 7.49e-78 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.28e-54 c.55.3.10 120785 1si2A 149 3.47e-13 b.34.14.1 105569 2qvwA 756 0.001249 1jx6A 342 0.1626 c.93.1.1 67406 2qh9A 184 1.079 5nul 138 1.273 1vbuA 328 1.782 c.1.8.3 119963 1zxxA 319 1.900 1rj9A 304 1.917 a.24.13.1,c.37.1.10 97553,97554 1rypD 241 2.184 d.153.1.4 41935 2og2A 359 2.317 3b9qA 302 2.908 2i7vA 459 3.206 2db3A 434 3.699 2hqbA 296 4.114 2gdjA 264 4.375 c.37.1.11 135018 1u4nA 310 5.291 c.69.1.2 113021 1f07A 321 6.187 c.1.16.3 59560 2qy9A 309 6.188 2qu7A 288 6.744 2fqxA 318 6.768 1q77A 138 8.440 c.26.2.4 96023 1cfr 285 8.579 1z15A 344 9.101 1ezwA 349 9.327 c.1.16.3 29558 1edg 380 9.563 8abpA 306 9.779 c.93.1.1 35647 1dpeA 507 9.844 c.94.1.1 35799 1jyeA 349 10.28 c.93.1.1 67455 1gudA 288 10.90 c.93.1.1 83326 2qvcA 313 11.38 1usgA 346 12.37 c.93.1.1 99864 1jndA 420 13.01 c.1.8.5,d.26.3.1 71757,71758 3d0cA 314 13.10 1xzoA 174 13.14 c.47.1.10 122474 5nulA 138 14.24 c.23.5.1 31191 1vicA 262 14.31 c.68.1.13 100756 2qh8A 302 15.23 2fliA 220 15.57 c.1.2.2 133714 1dusA 194 16.57 c.66.1.4 34182 2i1qA 322 19.01 a.60.4.1,c.37.1.11 136984,136985 2pq6A 482 19.08 1rypG 244 19.44 d.153.1.4 41938 1rtqA 299 20.18 c.56.5.4 97819 2qu8A 228 20.85 1sw5B 275 20.91 c.94.1.1 106070 1booA 323 21.44 c.66.1.11 34248 1rypE 242 22.08 d.153.1.4 41936 1r8eA 278 22.35 a.6.1.3,d.60.1.1 104843,104844 2a6zA 222 22.58 b.29.1.13 126319 1sjiA 350 23.01 2vafA 378 23.49 1bg4A 302 23.76 c.1.8.3 28806 2v9dA 343 23.78 8abp 306 24.33 2i4iA 417 24.40 2bjbA 462 25.38 2p8tA 200 25.62 2d0bA 310 25.64 2fvyA 309 26.52 c.93.1.1 134227 2r8wA 332 26.97 1n82A 331 27.92 c.1.8.3 91703 1ni9A 338 28.09 e.7.1.2 85739 1zy7A 403 28.18 1lucA 355 28.38 c.1.16.1 29547 3d02A 303 28.59 1ufaA 520 28.69 a.8.3.3,c.6.2.4 99329,99330 2glfA 450 29.32 2purA 292 30.03 1a8y 367 30.50 2q9oA 559 30.83 1sqgA 429 30.86 a.79.1.3,c.66.1.38 105912,105913 2d16A 162 30.97 1k8kF 168 32.50 d.198.2.1 68312 1rvv1 154 32.80 1lucB 324 33.74 c.1.16.1 29548 3bm1A 183 34.94 1yloA 348 35.07 b.49.3.1,c.56.5.4 123659,123660 1evlA 401 36.58 c.51.1.1,d.104.1.1 33202,40751 1qwjA 229 36.59 c.68.1.13 96478 1vheA 373 36.87 b.49.3.1,c.56.5.4 100669,100670 2az4A 429 37.55 d.157.1.10 127597 1mkzA 172 38.44 c.57.1.1 84998 2vc6A 292 38.51 1kcfA 258 39.03 a.140.2.1,c.55.3.7 68434,68435 2g8lA 299 40.40 e.50.1.1 134775 2jayA 291 40.87 2q7sA 290 41.51 2ii3A 262 42.54 1uekA 275 44.06 d.14.1.5,d.58.26.5 88483,88484 1dbqA 289 44.16 c.93.1.1 35666 1nqkA 381 45.37 c.1.16.4 92050 2o20A 332 45.47 1f74A 293 45.73 c.1.10.1 29079 2rebA 352 46.73 c.37.1.11,d.48.1.1 32282,38767 2e18A 257 47.30 2dejA 350 48.27 1w32A 348 49.40 c.1.8.3 114120 2rfgA 297 49.45 2qyvA 487 50.16 1qopA 268 50.45 c.1.2.4 28570 2ooqA 286 50.99 1vggA 161 52.65 d.256.1.1 113647 1tjyA 316 52.71 c.93.1.1 107062 1gveA 327 53.46 c.1.7.1 70597 1rypF 233 53.87 d.153.1.4 41937 2h8eA 120 54.63 2g2cA 167 54.64 c.57.1.1 134535 2aaxA 275 54.88 1u3dA 509 57.70 a.99.1.1,c.28.1.1 107638,107639 1h7eA 245 58.12 c.68.1.13 60717 2gpyA 233 58.32 1rhcA 330 58.62 c.1.16.3 97468 2bcjB 340 58.93 b.69.4.1 128289 1g0uC 243 59.03 d.153.1.4 41948 1hi9A 274 60.30 c.99.1.1 61063 1t7rA 269 61.61 a.123.1.1 106635 1np7A 489 64.44 a.99.1.1,c.28.1.1 80677,80678 1jssA 224 64.57 d.129.3.2 71844 1pcxA 810 64.77 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 3canA 182 65.31 3bv0A 437 66.30 2gk4A 232 66.96 1a0iA 348 67.01 b.40.4.6,d.142.2.1 25363,41577 2z2uA 311 67.88 1xjdA 345 68.07 d.144.1.7 115388 1yarA 233 68.51 d.153.1.4 122837 2qsfA 533 68.96 3cb6A 444 69.07 2qbuA 232 69.13 1x89A 178 71.07 b.60.1.1 121799 2pjkA 178 71.42 1kkhA 317 71.61 d.14.1.5,d.58.26.3 72645,72646 1nw3A 416 74.12 c.66.1.31 86288 2fdxA 138 74.63 c.23.5.1 31192 2e0nA 259 75.31 1yzhA 214 76.49 c.66.1.53 124277 1xkyA 301 76.95 c.1.10.1 122094 1h4rA 314 77.44 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1r9jA 673 78.99 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1vgyA 393 79.57 c.56.5.4,d.58.19.1 100620,100621 1o5kA 306 80.76 c.1.10.1 92504 1edgA 380 80.82 c.1.8.3 28807 1yb0A 159 81.86 d.118.1.1 122865 1fxoA 293 82.75 c.68.1.6 34524 1wekA 217 84.04 c.129.1.1 114553 2b81A 323 84.22 1tezA 474 85.99 a.99.1.1,c.28.1.1 112409,112410 2cz9A 350 86.21 2ih8A 559 87.88 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2csuA 457 88.04 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2z08A 137 89.93