# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.96e-76 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.71e-53 c.55.3.10 120785 1si2A 149 9.45e-13 b.34.14.1 105569 2qvwA 756 0.000623 1jx6A 342 0.2666 c.93.1.1 67406 1rj9A 304 0.9443 a.24.13.1,c.37.1.10 97553,97554 2qh9A 184 1.232 5nul 138 1.521 2og2A 359 1.576 3b9qA 302 1.800 1vbuA 328 1.895 c.1.8.3 119963 1zxxA 319 2.057 1u4nA 310 2.105 c.69.1.2 113021 2hqbA 296 2.258 2db3A 434 3.154 2qy9A 309 3.654 2gdjA 264 4.929 c.37.1.11 135018 2fqxA 318 5.785 1q77A 138 5.949 c.26.2.4 96023 2i7vA 459 6.454 1rypD 241 6.881 d.153.1.4 41935 1cfr 285 8.772 1z15A 344 8.903 8abpA 306 8.918 c.93.1.1 35647 1jyeA 349 8.995 c.93.1.1 67455 1f07A 321 9.542 c.1.16.3 59560 1edg 380 11.27 1usgA 346 11.54 c.93.1.1 99864 2qvcA 313 11.81 1xzoA 174 12.28 c.47.1.10 122474 1ezwA 349 12.35 c.1.16.3 29558 2fliA 220 14.64 c.1.2.2 133714 2pq6A 482 15.16 1sjiA 350 15.39 2qh8A 302 15.48 1dpeA 507 15.91 c.94.1.1 35799 2qu7A 288 16.99 1bg4A 302 17.31 c.1.8.3 28806 2vafA 378 17.56 1booA 323 17.91 c.66.1.11 34248 8abp 306 18.92 2i4iA 417 18.98 2qu8A 228 19.46 2i1qA 322 19.64 a.60.4.1,c.37.1.11 136984,136985 1jndA 420 19.80 c.1.8.5,d.26.3.1 71757,71758 5nulA 138 20.39 c.23.5.1 31191 1gudA 288 21.37 c.93.1.1 83326 1n82A 331 21.44 c.1.8.3 91703 2bjbA 462 21.66 1rtqA 299 22.91 c.56.5.4 97819 1kcfA 258 24.00 a.140.2.1,c.55.3.7 68434,68435 1sqgA 429 24.89 a.79.1.3,c.66.1.38 105912,105913 2d0bA 310 25.42 3d0cA 314 25.48 2v9dA 343 27.08 2ih8A 559 27.58 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1mkzA 172 28.41 c.57.1.1 84998 1ufaA 520 29.19 a.8.3.3,c.6.2.4 99329,99330 1rvv1 154 29.40 1a8y 367 29.54 1vicA 262 29.63 c.68.1.13 100756 2az4A 429 30.70 d.157.1.10 127597 2q9oA 559 31.27 1evlA 401 31.60 c.51.1.1,d.104.1.1 33202,40751 2qyvA 487 33.12 2r8wA 332 33.32 1r8eA 278 33.63 a.6.1.3,d.60.1.1 104843,104844 1lucA 355 33.66 c.1.16.1 29547 1dusA 194 33.97 c.66.1.4 34182 2e18A 257 34.80 1wekA 217 36.11 c.129.1.1 114553 2a6zA 222 36.20 b.29.1.13 126319 2fvyA 309 36.22 c.93.1.1 134227 1yloA 348 36.91 b.49.3.1,c.56.5.4 123659,123660 2ii3A 262 38.66 2g2cA 167 39.14 c.57.1.1 134535 2glfA 450 39.73 2p8tA 200 40.05 2h8eA 120 40.58 3canA 182 42.19 1lucB 324 42.73 c.1.16.1 29548 2g8lA 299 43.69 e.50.1.1 134775 1sw5B 275 44.11 c.94.1.1 106070 3d02A 303 44.18 2purA 292 44.43 2ooqA 286 45.28 2pjkA 178 47.90 1zy7A 403 47.98 1lzlA 323 49.36 c.69.1.2 78306 1edgA 380 50.01 c.1.8.3 28807 2rebA 352 50.18 c.37.1.11,d.48.1.1 32282,38767 1t7rA 269 50.37 a.123.1.1 106635 1ni9A 338 50.40 e.7.1.2 85739 1vgyA 393 52.70 c.56.5.4,d.58.19.1 100620,100621 1xjdA 345 53.11 d.144.1.7 115388 1w32A 348 53.87 c.1.8.3 114120 1rhcA 330 54.29 c.1.16.3 97468 1uekA 275 54.69 d.14.1.5,d.58.26.5 88483,88484 2aaxA 275 55.25 2bklA 695 56.73 2o20A 332 56.86 2vc6A 292 56.91 1tjyA 316 57.44 c.93.1.1 107062 1qopA 268 57.50 c.1.2.4 28570 1va6A 518 57.69 d.128.1.4 113598 2dejA 350 58.08 1k8kF 168 58.99 d.198.2.1 68312 1zc6A 305 59.30 c.55.1.5,c.55.1.5 124888,124889 1jssA 224 59.77 d.129.3.2 71844 3bm1A 183 60.84 1vheA 373 61.04 b.49.3.1,c.56.5.4 100669,100670 1pcxA 810 61.94 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2b81A 323 62.74 1gveA 327 63.17 c.1.7.1 70597 1qwjA 229 63.50 c.68.1.13 96478 1rypE 242 64.09 d.153.1.4 41936 2rfgA 297 64.30 2q7sA 290 64.58 1r9jA 673 65.52 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2qsfA 533 66.12 2z2uA 311 68.22 3bchA 253 68.85 1fxoA 293 69.80 c.68.1.6 34524 1eejA 216 70.51 c.47.1.9,d.17.3.1 33057,38071 2qbuA 232 73.40 2gk4A 232 74.41 3cb6A 444 75.68 1nqkA 381 75.89 c.1.16.4 92050 1r85A 379 77.13 c.1.8.3 104839 3bv0A 437 78.65 1rypG 244 79.17 d.153.1.4 41938 1u9yA 284 79.58 c.61.1.2,c.61.1.2 119655,119656 2z08A 137 82.12 1yb0A 159 82.89 d.118.1.1 122865 1yzhA 214 83.78 c.66.1.53 124277 1x89A 178 83.84 b.60.1.1 121799 1hi9A 274 84.56 c.99.1.1 61063 2fdxA 138 85.52 c.23.5.1 31192 2yx0A 342 85.63 1np7A 489 85.87 a.99.1.1,c.28.1.1 80677,80678 2qtzA 539 86.10 2pezA 179 87.12 1nfp 228 87.95 1f74A 293 88.61 c.1.10.1 29079 1dbqA 289 88.78 c.93.1.1 35666 2qv6A 268 88.87 1o5kA 306 88.93 c.1.10.1 92504 1kkhA 317 89.02 d.14.1.5,d.58.26.3 72645,72646