# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.60e-80 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.25e-56 c.55.3.10 120785 1si2A 149 2.78e-13 b.34.14.1 105569 2qvwA 756 0.000575 1jx6A 342 0.2364 c.93.1.1 67406 5nul 138 1.030 1rj9A 304 1.422 a.24.13.1,c.37.1.10 97553,97554 2qh9A 184 1.592 1vbuA 328 1.829 c.1.8.3 119963 1zxxA 319 2.006 2og2A 359 2.335 2hqbA 296 2.892 2db3A 434 2.895 1u4nA 310 3.386 c.69.1.2 113021 3b9qA 302 3.617 2i7vA 459 4.729 2gdjA 264 5.606 c.37.1.11 135018 2fqxA 318 5.758 1cfr 285 5.818 1f07A 321 6.726 c.1.16.3 59560 1q77A 138 6.878 c.26.2.4 96023 1xzoA 174 7.906 c.47.1.10 122474 1edg 380 8.007 1rypD 241 8.628 d.153.1.4 41935 2pq6A 482 9.003 1ezwA 349 9.149 c.1.16.3 29558 1jyeA 349 9.541 c.93.1.1 67455 2qu7A 288 9.805 2qy9A 309 10.41 8abpA 306 11.40 c.93.1.1 35647 1dpeA 507 12.57 c.94.1.1 35799 1bg4A 302 13.15 c.1.8.3 28806 1usgA 346 13.41 c.93.1.1 99864 1z15A 344 15.09 2qvcA 313 15.15 1booA 323 15.75 c.66.1.11 34248 2qh8A 302 15.88 2i1qA 322 16.40 a.60.4.1,c.37.1.11 136984,136985 1evlA 401 16.75 c.51.1.1,d.104.1.1 33202,40751 1gudA 288 17.07 c.93.1.1 83326 2fliA 220 17.93 c.1.2.2 133714 2i4iA 417 18.52 1n82A 331 19.12 c.1.8.3 91703 1sjiA 350 19.42 1ufaA 520 19.66 a.8.3.3,c.6.2.4 99329,99330 2qu8A 228 20.83 5nulA 138 21.00 c.23.5.1 31191 2az4A 429 21.11 d.157.1.10 127597 1dusA 194 21.95 c.66.1.4 34182 2vafA 378 22.64 8abp 306 22.99 1jndA 420 23.71 c.1.8.5,d.26.3.1 71757,71758 1kcfA 258 23.93 a.140.2.1,c.55.3.7 68434,68435 1a8y 367 24.25 2v9dA 343 24.39 2bjbA 462 25.14 1mkzA 172 25.23 c.57.1.1 84998 3d0cA 314 26.00 1lucA 355 26.39 c.1.16.1 29547 2ooqA 286 27.08 1zy7A 403 27.49 2q9oA 559 28.43 1rtqA 299 28.60 c.56.5.4 97819 2aaxA 275 29.14 2d0bA 310 29.96 1qopA 268 32.14 c.1.2.4 28570 2qyvA 487 32.27 2r8wA 332 32.34 1nqkA 381 33.46 c.1.16.4 92050 2e18A 257 33.73 1lucB 324 34.03 c.1.16.1 29548 2fvyA 309 34.22 c.93.1.1 134227 1rvv1 154 34.74 2purA 292 35.53 1va6A 518 35.93 d.128.1.4 113598 2q7sA 290 36.17 1vicA 262 36.40 c.68.1.13 100756 2rebA 352 37.46 c.37.1.11,d.48.1.1 32282,38767 2g8lA 299 37.68 e.50.1.1 134775 1t7rA 269 39.24 a.123.1.1 106635 3bm1A 183 40.30 1sw5B 275 40.93 c.94.1.1 106070 1sqgA 429 41.25 a.79.1.3,c.66.1.38 105912,105913 2g2cA 167 41.49 c.57.1.1 134535 2pjkA 178 42.69 1k8kF 168 44.02 d.198.2.1 68312 2vc6A 292 44.14 2ii3A 262 45.54 2b81A 323 45.79 1w32A 348 46.17 c.1.8.3 114120 2ih8A 559 47.47 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 3d02A 303 47.56 2dejA 350 47.76 1edgA 380 47.95 c.1.8.3 28807 1ni9A 338 49.59 e.7.1.2 85739 2h8eA 120 49.63 3canA 182 49.66 2glfA 450 51.13 3bv0A 437 51.84 2qbuA 232 53.06 1xjdA 345 53.83 d.144.1.7 115388 1rhcA 330 53.97 c.1.16.3 97468 2rfgA 297 54.80 1r8eA 278 55.94 a.6.1.3,d.60.1.1 104843,104844 1jssA 224 56.83 d.129.3.2 71844 1qwjA 229 57.10 c.68.1.13 96478 2r91A 286 57.68 1hi9A 274 57.91 c.99.1.1 61063 1f74A 293 57.94 c.1.10.1 29079 1u3dA 509 58.76 a.99.1.1,c.28.1.1 107638,107639 1lzlA 323 59.54 c.69.1.2 78306 2yx0A 342 59.86 1o5kA 306 60.94 c.1.10.1 92504 1r9jA 673 62.24 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1xkyA 301 62.75 c.1.10.1 122094 1yloA 348 66.48 b.49.3.1,c.56.5.4 123659,123660 1nw3A 416 68.13 c.66.1.31 86288 2a6zA 222 68.50 b.29.1.13 126319 1vgyA 393 69.38 c.56.5.4,d.58.19.1 100620,100621 1uekA 275 70.06 d.14.1.5,d.58.26.5 88483,88484 2z0mA 337 71.82 1mmqA 170 72.53 d.92.1.11 40396 1np7A 489 73.70 a.99.1.1,c.28.1.1 80677,80678 1rypG 244 74.11 d.153.1.4 41938 3c6qA 311 74.11 2e0nA 259 74.67 2o20A 332 74.83 2qsfA 533 76.45 2jayA 291 76.84 2z2uA 311 77.59 2hehA 387 77.75 3cg6A 146 78.10 2fdxA 138 78.16 c.23.5.1 31192 3bchA 253 78.21 1yb0A 159 78.27 d.118.1.1 122865 3cb6A 444 80.04 1wekA 217 80.83 c.129.1.1 114553 2fb2A 340 81.59 1r85A 379 83.49 c.1.8.3 104839 1a0iA 348 83.50 b.40.4.6,d.142.2.1 25363,41577 1vheA 373 83.61 b.49.3.1,c.56.5.4 100669,100670 1z7gA 217 84.78 c.61.1.1 124624 1h7eA 245 84.94 c.68.1.13 60717 1tezA 474 85.04 a.99.1.1,c.28.1.1 112409,112410 1vefA 395 85.89 c.67.1.4 120018 1nq6A 302 86.20 c.1.8.3 92046 1zc6A 305 86.61 c.55.1.5,c.55.1.5 124888,124889 2q62A 247 86.62 2qv6A 268 86.77 1gveA 327 86.79 c.1.7.1 70597 2csuA 457 87.52 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1dbqA 289 88.01 c.93.1.1 35666 1tjyA 316 88.93 c.93.1.1 107062