# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 9.14e-50 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 3.57e-37 c.55.3.10 120785 1si2A 149 1.08e-09 b.34.14.1 105569 2qvwA 756 0.04357 1jx6A 342 0.1067 c.93.1.1 67406 2fvyA 309 0.1943 c.93.1.1 134227 1gudA 288 0.2126 c.93.1.1 83326 8abp 306 0.5077 8abpA 306 0.7392 c.93.1.1 35647 2ioyA 283 0.9671 1gca 309 0.9882 3d02A 303 1.024 2qvcA 313 1.298 2qh8A 302 1.423 2fn9A 290 1.599 2r8wA 332 1.932 1z15A 344 2.461 1tjyA 316 3.125 c.93.1.1 107062 2dri 271 3.438 2c4wA 176 4.033 2rjoA 332 4.345 2qy9A 309 4.369 2qh9A 184 4.838 1zxxA 319 5.545 3d0cA 314 6.138 2qwxA 231 6.139 1gtzA 156 6.276 c.23.13.1 70539 3b9qA 302 6.335 1rypG 244 6.591 d.153.1.4 41938 1jyeA 349 7.001 c.93.1.1 67455 2fqxA 318 7.537 1dbqA 289 7.784 c.93.1.1 35666 1bykA 255 8.124 c.93.1.1 35706 1f07A 321 9.052 c.1.16.3 59560 1rvv1 154 9.503 2hqbA 296 9.639 3c6qA 311 9.665 2h3hA 313 10.21 2purA 292 10.76 1vbuA 328 11.83 c.1.8.3 119963 2og2A 359 12.18 1usgA 346 12.54 c.93.1.1 99864 1pea 385 12.96 2v9dA 343 13.17 1h05A 146 13.94 c.23.13.1 76433 1rj9A 304 13.94 a.24.13.1,c.37.1.10 97553,97554 1o5kA 306 14.70 c.1.10.1 92504 1bg4A 302 15.55 c.1.8.3 28806 2vc6A 292 15.68 2ehhA 294 16.90 1uqrA 154 17.88 c.23.13.1 99779 2fliA 220 17.89 c.1.2.2 133714 3brsA 289 18.29 1hqkA 154 18.43 c.16.1.1 65902 2rfgA 297 18.54 1u0mA 382 19.16 c.95.1.2,c.95.1.2 107557,107558 1r85A 379 20.02 c.1.8.3 104839 2g2cA 167 20.29 c.57.1.1 134535 1yloA 348 21.93 b.49.3.1,c.56.5.4 123659,123660 2r91A 286 21.95 2atsA 292 21.99 c.1.10.1 127306 1f74A 293 23.37 c.1.10.1 29079 1rypD 241 24.19 d.153.1.4 41935 1wvqA 167 24.34 2qu7A 288 24.58 1rrvA 416 25.14 c.87.1.5 105083 2i1qA 322 28.36 a.60.4.1,c.37.1.11 136984,136985 1vggA 161 28.66 d.256.1.1 113647 2driA 271 29.10 c.93.1.1 35637 2pjkA 178 29.40 1hl2A 297 33.29 c.1.10.1 83581 1mkzA 172 34.02 c.57.1.1 84998 1cfr 285 34.11 1y5eA 169 36.26 c.57.1.1 122632 1m1nB 522 36.35 c.92.2.3 78418 1yarA 233 40.05 d.153.1.4 122837 2hzlA 365 40.07 2qv7A 337 40.16 1sg0A 230 40.31 c.23.5.3 118955 1ezwA 349 42.15 c.1.16.3 29558 1vgyA 393 42.91 c.56.5.4,d.58.19.1 100620,100621 1nf2A 268 43.13 c.108.1.10 91849 1nw3A 416 43.34 c.66.1.31 86288 2abqA 306 44.88 c.72.1.1 126528 2in3A 216 46.75 1twiA 434 46.82 b.49.2.3,c.1.6.1 107399,107400 2a6zA 222 50.50 b.29.1.13 126319 2i4iA 417 51.14 2iutA 574 51.23 2b5tI 432 52.21 e.1.1.1 127905 1va6A 518 53.73 d.128.1.4 113598 1rypE 242 54.89 d.153.1.4 41936 1rhcA 330 56.39 c.1.16.3 97468 1xkyA 301 57.14 c.1.10.1 122094 2ywiA 196 59.58 1geqA 248 60.37 c.1.2.4 28589 1lucB 324 60.72 c.1.16.1 29548 5nul 138 61.32 2d16A 162 63.44 1x8bA 289 63.47 1k8kF 168 63.81 d.198.2.1 68312 1lqaA 346 64.11 c.1.7.1 84674 3ctpA 330 64.67 1io2A 213 64.84 c.55.3.1 62612 2o55A 258 64.97 2hhpA 530 65.08 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 1yb0A 159 65.56 d.118.1.1 122865 1td2A 287 68.21 c.72.1.5 106765 2obxA 157 68.41 3bm1A 183 70.94 2iksA 293 72.19 2g4rA 160 72.26 2bogX 286 72.60 1wr8A 231 72.68 c.108.1.10 114836 1zx1A 231 73.69 c.23.5.3 125760 2b4yA 271 73.89 c.31.1.5 127868 1m6yA 301 73.97 a.60.13.1,c.66.1.23 78716,78717 1dpeA 507 74.23 c.94.1.1 35799 1g0uC 243 75.44 d.153.1.4 41948 2qsfA 533 75.54 1nqkA 381 76.87 c.1.16.4 92050 2ojpA 292 78.17 3b4uA 294 78.25 2o20A 332 78.64 1jyhA 157 80.55 d.60.1.3 71956 1iowA 306 80.67 c.30.1.2,d.142.1.1 31713,41481 2d59A 144 80.72 c.2.1.8 131266 1cb0A 283 81.26 c.56.2.1 33790 1ejbA 168 81.84 c.16.1.1 59417 2ooqA 286 82.82 1v4sA 455 83.52 c.55.1.3,c.55.1.3 100309,100310 1vgjA 184 86.99 1l6rA 227 87.04 c.108.1.10 77768 3bczA 293 87.27 1w6tA 444 88.90 c.1.11.1,d.54.1.1 120670,120671 1yh2A 175 89.28 d.20.1.1 123158