# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.72e-82 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.51e-57 c.55.3.10 120785 1si2A 149 6.07e-14 b.34.14.1 105569 2qvwA 756 0.000678 1jx6A 342 0.08536 c.93.1.1 67406 1rj9A 304 0.3532 a.24.13.1,c.37.1.10 97553,97554 2qh9A 184 0.4596 1zxxA 319 0.6067 2og2A 359 0.8024 2qy9A 309 1.148 3b9qA 302 1.397 1rypD 241 1.677 d.153.1.4 41935 2i7vA 459 3.501 1u4nA 310 3.680 c.69.1.2 113021 1vbuA 328 4.610 c.1.8.3 119963 2hqbA 296 4.932 5nul 138 6.081 1edg 380 6.250 1r8eA 278 7.281 a.6.1.3,d.60.1.1 104843,104844 2r8wA 332 7.287 2fqxA 318 7.393 1r9jA 673 8.146 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2qu7A 288 8.721 2gdjA 264 10.12 c.37.1.11 135018 1mkzA 172 10.46 c.57.1.1 84998 1bg4A 302 11.23 c.1.8.3 28806 1dpeA 507 11.29 c.94.1.1 35799 2i1qA 322 11.38 a.60.4.1,c.37.1.11 136984,136985 1vheA 373 11.45 b.49.3.1,c.56.5.4 100669,100670 1qopA 268 11.94 c.1.2.4 28570 2a6zA 222 12.28 b.29.1.13 126319 1gpuA 680 12.54 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2qh8A 302 13.51 1cfr 285 13.79 1f07A 321 13.88 c.1.16.3 59560 2db3A 434 14.11 1gz0A 253 14.44 c.116.1.1,d.79.3.3 76391,76392 1q77A 138 14.86 c.26.2.4 96023 1sjiA 350 15.03 3d0cA 314 15.68 1gudA 288 16.01 c.93.1.1 83326 1vicA 262 17.01 c.68.1.13 100756 1g0uC 243 17.58 d.153.1.4 41948 2qu8A 228 17.63 1n82A 331 17.66 c.1.8.3 91703 1ezwA 349 17.78 c.1.16.3 29558 1jyeA 349 17.86 c.93.1.1 67455 2fliA 220 18.34 c.1.2.2 133714 1jndA 420 18.42 c.1.8.5,d.26.3.1 71757,71758 1gveA 327 20.42 c.1.7.1 70597 1usgA 346 22.03 c.93.1.1 99864 2ehhA 294 22.06 2az4A 429 22.38 d.157.1.10 127597 2q9oA 559 22.76 2z08A 137 23.72 2jayA 291 23.73 1a0iA 348 23.93 b.40.4.6,d.142.2.1 25363,41577 3d02A 303 24.10 8abp 306 24.11 2ooqA 286 24.73 1dbqA 289 25.09 c.93.1.1 35666 2o0tA 467 25.25 1wvqA 167 25.35 2bs9A 503 25.98 b.71.1.2,c.1.8.3 129062,129063 1arb 268 26.01 8abpA 306 26.03 c.93.1.1 35647 2rebA 352 26.34 c.37.1.11,d.48.1.1 32282,38767 1z15A 344 27.59 5nulA 138 28.04 c.23.5.1 31191 1yzhA 214 28.28 c.66.1.53 124277 2pvaA 345 28.72 d.153.1.3 41850 1vggA 161 29.70 d.256.1.1 113647 2i4lA 458 30.79 2e18A 257 31.61 2g2cA 167 32.15 c.57.1.1 134535 1tjyA 316 32.80 c.93.1.1 107062 2bjbA 462 33.26 1mixA 206 33.55 a.11.2.1,b.55.1.5 79166,79167 2aytA 237 33.64 1rypG 244 33.96 d.153.1.4 41938 2purA 292 34.05 3bchA 253 34.73 2qvcA 313 34.96 2pjkA 178 36.51 1nqkA 381 40.08 c.1.16.4 92050 1vgyA 393 40.49 c.56.5.4,d.58.19.1 100620,100621 2vafA 378 40.53 2c4wA 176 41.31 2e0nA 259 41.68 2ioyA 283 43.34 3bm1A 183 43.59 1xzoA 174 43.72 c.47.1.10 122474 1a8yA 367 43.99 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2r8oA 669 44.51 2csuA 457 44.57 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2z2uA 311 44.58 2yx0A 342 47.48 2ax4A 198 48.04 1yloA 348 48.04 b.49.3.1,c.56.5.4 123659,123660 2fvyA 309 48.34 c.93.1.1 134227 1rvv1 154 48.87 2i4iA 417 49.34 2d16A 162 49.40 1k8kF 168 50.66 d.198.2.1 68312 2rfgA 297 50.77 2h8eA 120 51.68 1qwjA 229 51.72 c.68.1.13 96478 3canA 182 52.39 2r91A 286 53.07 1eejA 216 53.21 c.47.1.9,d.17.3.1 33057,38071 2v9dA 343 53.39 1wwrA 171 54.05 c.97.1.2 121366 1xjdA 345 54.35 d.144.1.7 115388 2q7sA 290 54.42 2j6vA 301 54.60 1exbA 332 55.05 c.1.7.1 28666 1sviA 195 55.92 c.37.1.8 106048 1mmqA 170 55.93 d.92.1.11 40396 1ni9A 338 57.57 e.7.1.2 85739 1ceoA 343 57.70 c.1.8.3 28808 1a8y 367 58.17 1l6rA 227 58.82 c.108.1.10 77768 1y5eA 169 58.95 c.57.1.1 122632 1yarA 233 60.23 d.153.1.4 122837 2yvuA 186 61.71 2b81A 323 61.77 1sqgA 429 62.07 a.79.1.3,c.66.1.38 105912,105913 1v4sA 455 62.84 c.55.1.3,c.55.1.3 100309,100310 1k7cA 233 62.97 c.23.10.4 68267 1bykA 255 63.50 c.93.1.1 35706 2b4yA 271 64.88 c.31.1.5 127868 3bt7A 369 66.38 2qsfA 533 66.59 2dejA 350 66.87 2bcjB 340 67.07 b.69.4.1 128289 3b2tA 311 67.79 1o5kA 306 68.01 c.1.10.1 92504 1o7jA 327 70.26 c.88.1.1 81140 1booA 323 71.19 c.66.1.11 34248 2gpyA 233 71.25 1bdmA 327 71.56 c.2.1.5,d.162.1.1 30137,42104 1rhcA 330 72.09 c.1.16.3 97468 1edgA 380 72.75 c.1.8.3 28807 2gk4A 232 73.27 2vc6A 292 73.42 1zy7A 403 74.57 3brcA 156 75.22 1lqaA 346 75.42 c.1.7.1 84674 1evlA 401 75.48 c.51.1.1,d.104.1.1 33202,40751 2dri 271 75.53 2cfmA 561 76.40 2glfA 450 76.58 1ug0A 88 76.74 a.217.1.1 107822 2i1yA 301 77.48 1jmvA 141 77.81 c.26.2.4 66897 1yumA 242 78.77 2fvgA 340 79.06 b.49.3.1,c.56.5.4 134201,134202 1sw5B 275 80.69 c.94.1.1 106070 1s5pA 235 81.04 c.31.1.5 98569 1kcfA 258 82.37 a.140.2.1,c.55.3.7 68434,68435 1z6rA 406 83.27 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1nw3A 416 83.53 c.66.1.31 86288 1kkhA 317 83.86 d.14.1.5,d.58.26.3 72645,72646 1rypF 233 84.25 d.153.1.4 41937 2d0bA 310 84.99 1kvkA 395 87.20 d.14.1.5,d.58.26.3 73060,73061 1ufaA 520 87.74 a.8.3.3,c.6.2.4 99329,99330 2f4mA 295 88.74 1fxoA 293 88.87 c.68.1.6 34524 1tr0A 108 89.35 d.58.4.4 107261 2b78A 385 89.85 b.122.1.9,c.66.1.51 128025,128026