# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.02e-52 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 6.67e-37 c.55.3.10 120785 1si2A 149 1.33e-08 b.34.14.1 105569 2qvwA 756 0.01841 1jx6A 342 0.4792 c.93.1.1 67406 2og2A 359 1.092 1k32A 1045 2.342 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2qy9A 309 3.249 2qh9A 184 3.359 1edgA 380 3.720 c.1.8.3 28807 2bklA 695 4.522 1ufaA 520 5.490 a.8.3.3,c.6.2.4 99329,99330 1evlA 401 6.152 c.51.1.1,d.104.1.1 33202,40751 2r8wA 332 6.671 3b9qA 302 6.894 2uuuA 584 7.122 1va6A 518 7.974 d.128.1.4 113598 1f07A 321 8.912 c.1.16.3 59560 1rj9A 304 9.074 a.24.13.1,c.37.1.10 97553,97554 1wyuB 474 10.86 c.67.1.7 121453 2hqbA 296 11.55 2e18A 257 12.13 1u4nA 310 12.20 c.69.1.2 113021 1v4sA 455 12.67 c.55.1.3,c.55.1.3 100309,100310 1zlqA 502 15.51 c.94.1.1 125253 1vbuA 328 16.03 c.1.8.3 119963 2ih8A 559 17.15 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1z15A 344 17.52 2qo3A 915 18.71 1rypD 241 18.71 d.153.1.4 41935 1ur1A 378 19.61 c.1.8.3 99804 2bvcA 486 19.97 d.15.9.1,d.128.1.1 129243,129244 1edg 380 20.51 2debA 653 21.91 1xl7A 612 25.81 c.43.1.3,c.43.1.3 115438,115439 8abpA 306 26.72 c.93.1.1 35647 2hoeA 380 26.84 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1zxxA 319 27.05 8abp 306 28.30 3b40A 417 28.77 2gdjA 264 29.14 c.37.1.11 135018 2g50A 530 29.46 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2nooA 502 30.54 1t5oA 351 31.73 c.124.1.5 106459 2qu7A 288 34.28 2rfgA 297 35.36 2bjbA 462 35.73 2o7cA 398 36.25 1vr5A 547 38.02 c.94.1.1 120437 2higA 487 38.06 1r9jA 673 38.78 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2gtqA 867 38.97 1geqA 248 39.22 c.1.2.4 28589 1tedA 393 39.81 c.95.1.2 106807 1sqgA 429 40.11 a.79.1.3,c.66.1.38 105912,105913 2b81A 323 40.85 2hivA 621 41.56 2glfA 450 41.77 2jayA 291 42.52 2v26A 784 43.92 5nul 138 44.05 2gouA 365 45.57 3d0cA 314 46.87 1x38A 602 47.59 c.1.8.7,c.23.11.1 121655,121656 2aaxA 275 47.92 3d02A 303 47.92 1rlmA 271 47.93 c.108.1.10 111860 2c1xA 456 51.39 1nw3A 416 51.89 c.66.1.31 86288 2nr8A 358 51.97 2aytA 237 52.20 2i7vA 459 53.31 1r8eA 278 53.71 a.6.1.3,d.60.1.1 104843,104844 2b78A 385 54.09 b.122.1.9,c.66.1.51 128025,128026 1xkyA 301 54.40 c.1.10.1 122094 2qh8A 302 54.44 4pgaA 337 54.79 c.88.1.1 35565 1l6sA 323 55.51 c.1.10.3 73627 2fvyA 309 56.81 c.93.1.1 134227 1xocA 520 57.00 c.94.1.1 122201 2d5lA 706 57.29 1ezwA 349 57.47 c.1.16.3 29558 2cjaA 522 59.53 2d1zA 436 59.99 1eexA 554 60.01 c.1.19.3 29650 2ehhA 294 60.03 2purA 292 60.42 1gudA 288 60.97 c.93.1.1 83326 2ojpA 292 61.05 2z2uA 311 61.47 1mkzA 172 62.09 c.57.1.1 84998 2hu5A 582 63.39 b.69.7.2,c.69.1.33 136763,136764 1mzjA 339 65.56 c.95.1.2,c.95.1.2 79700,79701 2az4A 429 65.94 d.157.1.10 127597 3c5iA 369 67.07 1d3gA 367 67.69 c.1.4.1 28600 2hx1A 284 68.12 2citA 282 68.20 c.1.8.3 130499 1xpkC 388 68.94 c.95.1.2,c.95.1.2 115747,115748 1vb3A 428 68.94 c.79.1.1 119942 2a6zA 222 69.33 b.29.1.13 126319 1exbA 332 70.47 c.1.7.1 28666 1jyeA 349 70.98 c.93.1.1 67455 1gveA 327 71.00 c.1.7.1 70597 2fstX 367 71.48 2yx0A 342 71.61 2h4tA 626 72.55 1g0uC 243 72.74 d.153.1.4 41948 1vyrA 364 72.79 c.1.4.1 108906 3bofA 566 73.12 1bdmA 327 73.28 c.2.1.5,d.162.1.1 30137,42104 2ooqA 286 74.22 1zu0A 529 75.03 1h8eA 510 75.49 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2fqxA 318 76.73 2ewfA 610 76.82 2yvdA 431 76.82 1lfwA 470 76.91 c.56.5.4,d.58.19.1 77942,77943 1ohlA 342 77.44 c.1.10.3 87035 2fliA 220 77.50 c.1.2.2 133714 7aatA 401 77.79 c.67.1.1 34250 2z08A 137 78.72 1q15A 503 78.82 c.26.2.1,d.153.1.1 95538,95539 2db3A 434 79.11 1y56B 382 79.99 1bg4A 302 80.00 c.1.8.3 28806 1a8lA 226 80.50 c.47.1.2,c.47.1.2 32777,32778 1a8l 226 82.09 1h2wA 710 83.21 b.69.7.1,c.69.1.4 76596,76597 1qopA 268 83.47 c.1.2.4 28570 1cbgA 490 83.65 c.1.8.4 28933 1dbqA 289 84.05 c.93.1.1 35666 1q77A 138 84.27 c.26.2.4 96023 2o7iA 592 84.44 1vptA 348 85.20 c.66.1.25 34207 2gfsA 372 86.53 d.144.1.7 135109 2acvA 463 86.83 1p5dX 463 86.91 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2d5wA 603 87.00 2h8eA 120 87.13 3b4uA 294 87.46 1hc7A 477 88.24 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1b26A 416 88.94 c.2.1.7,c.58.1.1 30232,33880 1lqaA 346 89.12 c.1.7.1 84674 2vc6A 292 89.29