# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 4.37e-78 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 3.59e-55 c.55.3.10 120785 1si2A 149 1.62e-13 b.34.14.1 105569 2qvwA 756 0.000727 1jx6A 342 0.1101 c.93.1.1 67406 1rj9A 304 0.3875 a.24.13.1,c.37.1.10 97553,97554 2og2A 359 0.6948 2qh9A 184 0.8863 1zxxA 319 1.149 2qy9A 309 1.328 3b9qA 302 1.355 2hqbA 296 2.098 1r9jA 673 3.371 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1rypD 241 3.954 d.153.1.4 41935 1u4nA 310 4.739 c.69.1.2 113021 2i7vA 459 5.337 2r8wA 332 6.012 1qopA 268 6.308 c.1.2.4 28570 2fqxA 318 6.403 5nul 138 7.039 2a6zA 222 7.667 b.29.1.13 126319 1gpuA 680 7.911 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1mkzA 172 8.413 c.57.1.1 84998 3d0cA 314 8.600 1sjiA 350 8.893 1vbuA 328 9.98 c.1.8.3 119963 1q77A 138 10.64 c.26.2.4 96023 2qh8A 302 11.27 2jayA 291 11.99 1gveA 327 13.42 c.1.7.1 70597 1dpeA 507 14.91 c.94.1.1 35799 1bg4A 302 14.92 c.1.8.3 28806 1vheA 373 14.94 b.49.3.1,c.56.5.4 100669,100670 2qu8A 228 15.16 1ezwA 349 15.87 c.1.16.3 29558 2q9oA 559 18.09 1cfr 285 18.81 1f07A 321 19.09 c.1.16.3 59560 2r8oA 669 19.32 2db3A 434 19.63 2ehhA 294 19.67 2ooqA 286 19.96 2fliA 220 20.11 c.1.2.2 133714 1jyeA 349 20.65 c.93.1.1 67455 2purA 292 21.04 2v9dA 343 21.85 2qu7A 288 21.99 2vafA 378 22.03 2b81A 323 22.17 1gz0A 253 23.50 c.116.1.1,d.79.3.3 76391,76392 1edg 380 23.56 1gudA 288 24.08 c.93.1.1 83326 1g0uC 243 24.50 d.153.1.4 41948 2e18A 257 25.01 1dbqA 289 25.15 c.93.1.1 35666 2z2uA 311 25.58 1r8eA 278 25.64 a.6.1.3,d.60.1.1 104843,104844 2g2cA 167 25.81 c.57.1.1 134535 8abpA 306 26.19 c.93.1.1 35647 2z08A 137 27.13 2rfgA 297 27.55 1usgA 346 27.74 c.93.1.1 99864 2aytA 237 29.10 2bjbA 462 29.37 1n82A 331 29.44 c.1.8.3 91703 1z15A 344 29.47 3bm1A 183 29.61 8abp 306 30.37 2gdjA 264 30.73 c.37.1.11 135018 2pjkA 178 30.81 2c4wA 176 31.05 1vgyA 393 31.11 c.56.5.4,d.58.19.1 100620,100621 3d02A 303 31.85 1xzoA 174 32.13 c.47.1.10 122474 2o0tA 467 33.75 1jndA 420 33.88 c.1.8.5,d.26.3.1 71757,71758 1arb 268 34.01 2r91A 286 34.82 1z7gA 217 35.56 c.61.1.1 124624 1o5kA 306 35.66 c.1.10.1 92504 2az4A 429 36.08 d.157.1.10 127597 2pvaA 345 36.53 d.153.1.3 41850 1tjyA 316 37.31 c.93.1.1 107062 1a8y 367 37.53 2e0nA 259 38.62 5nulA 138 40.28 c.23.5.1 31191 2qvcA 313 40.68 1nqkA 381 41.84 c.1.16.4 92050 1f74A 293 42.41 c.1.10.1 29079 1nw3A 416 42.52 c.66.1.31 86288 2fvyA 309 42.52 c.93.1.1 134227 1ufaA 520 43.15 a.8.3.3,c.6.2.4 99329,99330 1kcfA 258 43.34 a.140.2.1,c.55.3.7 68434,68435 1k8kF 168 43.52 d.198.2.1 68312 2vc6A 292 43.53 2bs9A 503 43.95 b.71.1.2,c.1.8.3 129062,129063 3canA 182 43.95 2d0bA 310 46.85 2h8eA 120 48.18 1yzhA 214 48.18 c.66.1.53 124277 1booA 323 49.22 c.66.1.11 34248 1lqaA 346 51.65 c.1.7.1 84674 2b4yA 271 52.93 c.31.1.5 127868 2r5nA 669 53.12 1ni9A 338 54.28 e.7.1.2 85739 2hoeA 380 54.69 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1z6rA 406 54.79 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1a0iA 348 55.69 b.40.4.6,d.142.2.1 25363,41577 1vicA 262 56.98 c.68.1.13 100756 1yloA 348 57.25 b.49.3.1,c.56.5.4 123659,123660 3b4uA 294 57.61 2csuA 457 57.66 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1rhcA 330 58.88 c.1.16.3 97468 1wwrA 171 59.37 c.97.1.2 121366 1vggA 161 59.51 d.256.1.1 113647 1rvv1 154 59.79 1mmqA 170 59.81 d.92.1.11 40396 1hl2A 297 59.82 c.1.10.1 83581 2i4iA 417 60.04 1mixA 206 60.26 a.11.2.1,b.55.1.5 79166,79167 1ny1A 240 60.92 c.6.2.3 86395 1v4sA 455 61.01 c.55.1.3,c.55.1.3 100309,100310 2ioyA 283 62.05 3bt7A 369 62.47 1sviA 195 62.99 c.37.1.8 106048 1wvqA 167 63.34 2rjoA 332 63.36 2f4mA 295 64.31 1y5eA 169 64.77 c.57.1.1 122632 1sqgA 429 65.79 a.79.1.3,c.66.1.38 105912,105913 1xjdA 345 65.80 d.144.1.7 115388 1rypG 244 66.28 d.153.1.4 41938 1o7jA 327 68.08 c.88.1.1 81140 2rebA 352 68.15 c.37.1.11,d.48.1.1 32282,38767 2i1qA 322 68.37 a.60.4.1,c.37.1.11 136984,136985 2i1yA 301 68.52 1lucA 355 68.68 c.1.16.1 29547 1a8yA 367 69.12 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2qsfA 533 70.65 3bchA 253 71.04 1exbA 332 74.25 c.1.7.1 28666 1y56B 382 74.32 3c5iA 369 74.94 1yumA 242 75.53 1kkhA 317 77.62 d.14.1.5,d.58.26.3 72645,72646 2q62A 247 79.63 2pezA 179 80.64 2j6vA 301 80.69 3b2tA 311 81.28 1edgA 380 81.60 c.1.8.3 28807 1ceoA 343 81.63 c.1.8.3 28808 1a3c 181 81.99 3brcA 156 82.10 1qwjA 229 84.22 c.68.1.13 96478 1zceA 155 84.45 b.122.1.8 124907 1geqA 248 84.92 c.1.2.4 28589 1zy7A 403 85.73 2qyvA 487 86.59 1ug0A 88 86.75 a.217.1.1 107822 1jyoA 130 86.77 d.198.1.1 67483 1bdmA 327 87.75 c.2.1.5,d.162.1.1 30137,42104 1hgxA 183 88.10 c.61.1.1 34027 2g4rA 160 89.28 2ax4A 198 89.90