# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.66e-75 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 4.46e-52 c.55.3.10 120785 1si2A 149 3.58e-12 b.34.14.1 105569 2qvwA 756 0.000184 1jx6A 342 0.5674 c.93.1.1 67406 1rypD 241 1.966 d.153.1.4 41935 2qh9A 184 2.088 2hqbA 296 2.326 2i7vA 459 2.843 1ufaA 520 3.554 a.8.3.3,c.6.2.4 99329,99330 1dpeA 507 3.995 c.94.1.1 35799 1u4nA 310 4.133 c.69.1.2 113021 2fqxA 318 4.889 2d0bA 310 4.899 2og2A 359 5.601 1vbuA 328 6.275 c.1.8.3 119963 2d5wA 603 7.116 2e0nA 259 8.439 1sqgA 429 8.637 a.79.1.3,c.66.1.38 105912,105913 2ih8A 559 8.937 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1kcfA 258 9.740 a.140.2.1,c.55.3.7 68434,68435 1ni9A 338 10.58 e.7.1.2 85739 1zxxA 319 10.91 1g0uC 243 12.01 d.153.1.4 41948 1z15A 344 13.17 3d0cA 314 14.67 1kvkA 395 14.98 d.14.1.5,d.58.26.3 73060,73061 2purA 292 16.00 1rj9A 304 18.54 a.24.13.1,c.37.1.10 97553,97554 2jayA 291 18.73 1edg 380 18.77 2bklA 695 19.95 5nul 138 20.43 2gdjA 264 21.54 c.37.1.11 135018 2az4A 429 22.27 d.157.1.10 127597 2qu8A 228 22.49 1qopA 268 22.69 c.1.2.4 28570 1vheA 373 23.12 b.49.3.1,c.56.5.4 100669,100670 1jndA 420 23.75 c.1.8.5,d.26.3.1 71757,71758 2z2uA 311 24.97 1rypG 244 25.09 d.153.1.4 41938 1nw3A 416 26.07 c.66.1.31 86288 1q15A 503 26.99 c.26.2.1,d.153.1.1 95538,95539 1m1nA 491 27.86 c.92.2.3 78417 1arb 268 28.14 1bg4A 302 28.80 c.1.8.3 28806 2r8wA 332 29.02 1kkhA 317 29.88 d.14.1.5,d.58.26.3 72645,72646 2fliA 220 31.57 c.1.2.2 133714 1gakA 141 32.14 a.19.1.1 16415 1xjdA 345 32.34 d.144.1.7 115388 1wuuA 399 36.35 d.14.1.5,d.58.26.7 114900,114901 2qy9A 309 36.87 1f07A 321 38.51 c.1.16.3 59560 3b9qA 302 39.65 2qu7A 288 39.71 2bjbA 462 40.09 1ezwA 349 40.81 c.1.16.3 29558 2db3A 434 43.00 2aaxA 275 43.51 2d16A 162 43.64 1v4sA 455 44.13 c.55.1.3,c.55.1.3 100309,100310 2v9dA 343 44.20 1usgA 346 45.29 c.93.1.1 99864 2atsA 292 45.43 c.1.10.1 127306 2q9oA 559 47.36 1vb3A 428 48.44 c.79.1.1 119942 1bdmA 327 48.58 c.2.1.5,d.162.1.1 30137,42104 2pq6A 482 48.94 1cfr 285 49.93 1gveA 327 50.04 c.1.7.1 70597 2dejA 350 51.41 2qruA 274 52.11 2e18A 257 52.49 1k8kF 168 53.29 d.198.2.1 68312 2a8yA 270 53.58 1t7rA 269 54.16 a.123.1.1 106635 1jyeA 349 54.60 c.93.1.1 67455 1yarA 233 54.70 d.153.1.4 122837 1noyA 388 55.34 c.55.3.5 33713 1rypE 242 55.42 d.153.1.4 41936 1ug0A 88 55.94 a.217.1.1 107822 2i1qA 322 56.31 a.60.4.1,c.37.1.11 136984,136985 2g8lA 299 56.61 e.50.1.1 134775 1sw5B 275 57.01 c.94.1.1 106070 2qqhA 334 57.30 1wvqA 167 57.41 1yzhA 214 57.77 c.66.1.53 124277 1q77A 138 59.81 c.26.2.4 96023 1vggA 161 60.99 d.256.1.1 113647 2r91A 286 61.60 2i4iA 417 62.82 1yloA 348 63.87 b.49.3.1,c.56.5.4 123659,123660 1a0iA 348 64.17 b.40.4.6,d.142.2.1 25363,41577 2o7iA 592 65.93 1woqA 267 65.99 c.55.1.10,c.55.1.10 109462,109463 1ur1A 378 66.78 c.1.8.3 99804 1pieA 419 67.23 d.14.1.5,d.58.26.7 94706,94707 2q4wA 524 68.36 1l6rA 227 68.62 c.108.1.10 77768 8abpA 306 68.72 c.93.1.1 35647 1ynfA 458 69.13 d.126.1.7 123723 3bg1B 442 69.27 2a6zA 222 69.65 b.29.1.13 126319 1z6rA 406 69.68 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1ig8A 486 69.85 c.55.1.3,c.55.1.3 64746,64747 1xkyA 301 69.91 c.1.10.1 122094 2d5lA 706 69.94 1geqA 248 69.94 c.1.2.4 28589 2vafA 378 71.14 1f74A 293 72.22 c.1.10.1 29079 1o5kA 306 72.53 c.1.10.1 92504 1r9jA 673 72.97 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1sjiA 350 74.88 2fvyA 309 75.89 c.93.1.1 134227 2qvcA 313 75.97 1rypF 233 76.78 d.153.1.4 41937 2ehhA 294 77.63 2o0tA 467 78.75 3c5iA 369 82.86 8abp 306 83.39 1h2wA 710 84.06 b.69.7.1,c.69.1.4 76596,76597 3b40A 417 84.13 2g2cA 167 84.41 c.57.1.1 134535 2q7sA 290 84.49 1rtqA 299 85.31 c.56.5.4 97819 1n82A 331 85.41 c.1.8.3 91703 1f9aA 168 86.20 c.26.1.3 31602 1dbqA 289 87.87 c.93.1.1 35666 2hoeA 380 88.25 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2cmwA 310 88.85 2c1iA 431 88.88 c.6.2.3,d.341.1.1 129636,129637