# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.78e-78 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.93e-56 c.55.3.10 120785 1si2A 149 6.42e-14 b.34.14.1 105569 2qvwA 756 0.000127 1jx6A 342 0.2011 c.93.1.1 67406 1rypD 241 0.7392 d.153.1.4 41935 2qh9A 184 0.8298 1u4nA 310 1.294 c.69.1.2 113021 1zxxA 319 1.647 1rj9A 304 1.995 a.24.13.1,c.37.1.10 97553,97554 2fqxA 318 2.463 1dpeA 507 3.429 c.94.1.1 35799 2hqbA 296 3.658 2og2A 359 4.098 1sjiA 350 4.630 2db3A 434 5.058 2gdjA 264 5.541 c.37.1.11 135018 1sqgA 429 5.962 a.79.1.3,c.66.1.38 105912,105913 1r9jA 673 6.493 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 5nul 138 6.619 2e0nA 259 6.760 1f07A 321 7.870 c.1.16.3 59560 2jayA 291 8.075 1g0uC 243 9.687 d.153.1.4 41948 2r8wA 332 9.717 2i1qA 322 11.21 a.60.4.1,c.37.1.11 136984,136985 2qu8A 228 11.42 2i7vA 459 11.58 3b9qA 302 11.85 2a6zA 222 12.49 b.29.1.13 126319 2qu7A 288 12.49 2qy9A 309 12.62 1vheA 373 12.66 b.49.3.1,c.56.5.4 100669,100670 2purA 292 12.70 1jndA 420 13.56 c.1.8.5,d.26.3.1 71757,71758 1kcfA 258 15.96 a.140.2.1,c.55.3.7 68434,68435 2gy9C 206 15.99 1a0iA 348 16.53 b.40.4.6,d.142.2.1 25363,41577 1vbuA 328 16.73 c.1.8.3 119963 1vicA 262 17.12 c.68.1.13 100756 2d0bA 310 17.18 1edg 380 17.75 2qsfA 533 18.86 1ezwA 349 18.95 c.1.16.3 29558 2aaxA 275 19.04 2p8tA 200 19.14 1jyeA 349 19.18 c.93.1.1 67455 2z2uA 311 19.38 1q77A 138 21.75 c.26.2.4 96023 1yloA 348 22.06 b.49.3.1,c.56.5.4 123659,123660 2fliA 220 22.74 c.1.2.2 133714 1xzoA 174 23.13 c.47.1.10 122474 2v9dA 343 24.83 1yarA 233 25.11 d.153.1.4 122837 1rypG 244 25.26 d.153.1.4 41938 3d0cA 314 25.38 2r91A 286 25.96 2e18A 257 26.48 1f74A 293 26.84 c.1.10.1 29079 1gpuA 680 27.01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1qopA 268 27.58 c.1.2.4 28570 2i4lA 458 28.69 1gakA 141 28.76 a.19.1.1 16415 2vafA 378 30.62 1bg4A 302 30.87 c.1.8.3 28806 1rtqA 299 31.53 c.56.5.4 97819 1k8kF 168 31.56 d.198.2.1 68312 1ni9A 338 31.76 e.7.1.2 85739 1rypE 242 32.80 d.153.1.4 41936 2d16A 162 32.97 1wvqA 167 34.22 1rypF 233 34.55 d.153.1.4 41937 1cfr 285 35.28 1dbqA 289 35.54 c.93.1.1 35666 2qh8A 302 35.67 2g2cA 167 35.83 c.57.1.1 134535 8abpA 306 36.64 c.93.1.1 35647 1kkhA 317 39.36 d.14.1.5,d.58.26.3 72645,72646 1vggA 161 39.76 d.256.1.1 113647 2bjbA 462 40.27 2pvaA 345 42.23 d.153.1.3 41850 1gveA 327 43.10 c.1.7.1 70597 2gpyA 233 43.14 2dejA 350 43.19 2ns1B 116 46.60 2h8eA 120 47.07 1ufaA 520 47.11 a.8.3.3,c.6.2.4 99329,99330 1dusA 194 47.18 c.66.1.4 34182 8abp 306 47.84 2atsA 292 47.88 c.1.10.1 127306 2qm0A 275 47.91 1qwjA 229 48.22 c.68.1.13 96478 1woqA 267 48.59 c.55.1.10,c.55.1.10 109462,109463 2az4A 429 49.29 d.157.1.10 127597 1rypC 244 49.31 d.153.1.4 41934 1f9aA 168 49.45 c.26.1.3 31602 2i4iA 417 49.54 2ehhA 294 49.59 1mkzA 172 50.29 c.57.1.1 84998 2b4yA 271 50.31 c.31.1.5 127868 1r8eA 278 50.38 a.6.1.3,d.60.1.1 104843,104844 1gudA 288 50.77 c.93.1.1 83326 1vgyA 393 53.86 c.56.5.4,d.58.19.1 100620,100621 2q4wA 524 54.10 3b42A 135 54.22 1xjdA 345 54.23 d.144.1.7 115388 1z15A 344 54.75 2rfgA 297 55.23 1a8y 367 57.47 1n82A 331 57.87 c.1.8.3 91703 2glfA 450 58.75 2fiaA 162 59.24 d.108.1.1 133514 1yb0A 159 59.62 d.118.1.1 122865 1rhcA 330 60.50 c.1.16.3 97468 1usgA 346 62.31 c.93.1.1 99864 1yzhA 214 62.32 c.66.1.53 124277 2f4mA 295 62.60 1o5kA 306 63.15 c.1.10.1 92504 2csuA 457 63.80 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1l6rA 227 64.14 c.108.1.10 77768 1u3dA 509 65.50 a.99.1.1,c.28.1.1 107638,107639 2bs9A 503 66.49 b.71.1.2,c.1.8.3 129062,129063 1t7rA 269 67.29 a.123.1.1 106635 1xkyA 301 69.06 c.1.10.1 122094 5nulA 138 69.06 c.23.5.1 31191 2qi2A 347 69.87 2vc6A 292 72.17 1nqkA 381 72.34 c.1.16.4 92050 1nw3A 416 72.56 c.66.1.31 86288 1bkrA 109 74.25 a.40.1.1 17394 1ceoA 343 74.77 c.1.8.3 28808 2q7sA 290 75.03 1eziA 228 76.60 c.68.1.13 34512 2j9cA 119 76.97 2ii3A 262 77.04 1zceA 155 77.09 b.122.1.8 124907 2o0tA 467 78.87 1uekA 275 79.63 d.14.1.5,d.58.26.5 88483,88484 1mmqA 170 80.75 d.92.1.11 40396 2pii 112 80.91 1sw5B 275 81.02 c.94.1.1 106070 1np7A 489 81.22 a.99.1.1,c.28.1.1 80677,80678 1fxoA 293 82.94 c.68.1.6 34524 2r8oA 669 83.21 1rvv1 154 84.32 3bchA 253 85.10 2yxlA 450 85.35 2c4wA 176 87.10 2qruA 274 88.00 2o2gA 223 88.64 1nfp 228 89.91