# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 6.95e-88 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.84e-62 c.55.3.10 120785 1si2A 149 4.21e-15 b.34.14.1 105569 2qvwA 756 4.08e-05 1jx6A 342 0.1557 c.93.1.1 67406 2qh9A 184 0.9432 1zxxA 319 1.175 1u4nA 310 1.673 c.69.1.2 113021 1rypD 241 1.956 d.153.1.4 41935 2fqxA 318 2.139 2hqbA 296 2.269 2og2A 359 2.796 5nul 138 3.215 2db3A 434 3.261 2i7vA 459 3.906 1vbuA 328 4.793 c.1.8.3 119963 1sjiA 350 5.524 3b9qA 302 6.146 1rj9A 304 7.404 a.24.13.1,c.37.1.10 97553,97554 1rtqA 299 7.521 c.56.5.4 97819 2qy9A 309 7.783 2jayA 291 8.465 1edg 380 8.824 3d0cA 314 9.062 1kcfA 258 10.36 a.140.2.1,c.55.3.7 68434,68435 2e0nA 259 10.45 2z2uA 311 11.26 2d0bA 310 11.98 1f07A 321 13.62 c.1.16.3 59560 1jndA 420 14.70 c.1.8.5,d.26.3.1 71757,71758 2purA 292 15.51 1dpeA 507 15.58 c.94.1.1 35799 1ufaA 520 16.71 a.8.3.3,c.6.2.4 99329,99330 1q77A 138 16.72 c.26.2.4 96023 1cfr 285 16.78 1xzoA 174 16.80 c.47.1.10 122474 1vicA 262 17.24 c.68.1.13 100756 2gdjA 264 17.46 c.37.1.11 135018 2i4iA 417 18.91 1bg4A 302 19.85 c.1.8.3 28806 2qu7A 288 19.98 1vheA 373 20.09 b.49.3.1,c.56.5.4 100669,100670 1qopA 268 20.97 c.1.2.4 28570 1vggA 161 21.84 d.256.1.1 113647 2qu8A 228 21.89 1gudA 288 22.14 c.93.1.1 83326 2v9dA 343 22.19 2d16A 162 22.20 1yloA 348 22.66 b.49.3.1,c.56.5.4 123659,123660 1k8kF 168 22.85 d.198.2.1 68312 1sqgA 429 23.35 a.79.1.3,c.66.1.38 105912,105913 1jyeA 349 23.42 c.93.1.1 67455 1g0uC 243 23.45 d.153.1.4 41948 1xjdA 345 23.45 d.144.1.7 115388 1ezwA 349 25.04 c.1.16.3 29558 1dusA 194 25.07 c.66.1.4 34182 2az4A 429 25.44 d.157.1.10 127597 2r8wA 332 25.85 2a6zA 222 26.03 b.29.1.13 126319 2i1qA 322 26.20 a.60.4.1,c.37.1.11 136984,136985 1wvqA 167 27.01 2dejA 350 27.76 1f74A 293 30.56 c.1.10.1 29079 1mmqA 170 30.96 d.92.1.11 40396 3bm1A 183 31.70 1ni9A 338 32.13 e.7.1.2 85739 2fliA 220 32.75 c.1.2.2 133714 2qsfA 533 35.08 2r91A 286 35.45 1gveA 327 35.75 c.1.7.1 70597 2pq6A 482 36.94 1evlA 401 38.16 c.51.1.1,d.104.1.1 33202,40751 2p8tA 200 38.94 1yarA 233 39.06 d.153.1.4 122837 1n82A 331 39.23 c.1.8.3 91703 2i4lA 458 39.36 1r9jA 673 39.67 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2aaxA 275 39.68 1mkzA 172 40.21 c.57.1.1 84998 3d02A 303 40.46 1kkhA 317 40.57 d.14.1.5,d.58.26.3 72645,72646 2csuA 457 40.73 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 8abpA 306 42.25 c.93.1.1 35647 2pvaA 345 43.01 d.153.1.3 41850 2vafA 378 43.07 2g8lA 299 43.92 e.50.1.1 134775 1nw3A 416 44.48 c.66.1.31 86288 1vlmA 219 45.18 c.66.1.41 108836 2o0tA 467 46.04 2atsA 292 46.30 c.1.10.1 127306 1rypE 242 47.00 d.153.1.4 41936 2e18A 257 47.30 1mixA 206 47.47 a.11.2.1,b.55.1.5 79166,79167 2qbuA 232 48.92 2ehhA 294 49.00 1yzhA 214 49.41 c.66.1.53 124277 2vc6A 292 50.09 2qvcA 313 50.87 1xkyA 301 52.97 c.1.10.1 122094 2bjbA 462 53.42 1sw5B 275 54.49 c.94.1.1 106070 1rypF 233 55.09 d.153.1.4 41937 1rypG 244 55.11 d.153.1.4 41938 2glfA 450 55.27 1o5kA 306 55.64 c.1.10.1 92504 1bkrA 109 56.27 a.40.1.1 17394 2pt7A 330 57.08 1gakA 141 57.62 a.19.1.1 16415 2q7sA 290 59.43 1dbqA 289 59.46 c.93.1.1 35666 2qh8A 302 59.52 2g2cA 167 59.78 c.57.1.1 134535 2gy9C 206 60.83 1noyA 388 62.15 c.55.3.5 33713 3bv0A 437 63.15 2ii3A 262 63.36 5nulA 138 64.09 c.23.5.1 31191 8abp 306 65.80 1np7A 489 65.96 a.99.1.1,c.28.1.1 80677,80678 1a8y 367 66.20 2qm0A 275 66.80 2qt6A 498 67.74 2f4mA 295 67.88 1g6oA 330 67.95 c.37.1.11 32430 1i76A 163 68.03 d.92.1.11 61877 2qxfA 482 69.07 1rhcA 330 69.35 c.1.16.3 97468 1u6zA 513 71.17 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1nqkA 381 71.62 c.1.16.4 92050 1r8eA 278 71.96 a.6.1.3,d.60.1.1 104843,104844 2rfgA 297 73.27 2qyvA 487 76.01 1tjyA 316 76.73 c.93.1.1 107062 1rvv1 154 79.17 2q4wA 524 81.34 2b4yA 271 81.64 c.31.1.5 127868 3b40A 417 82.70 3bchA 253 83.96 1lzlA 323 83.99 c.69.1.2 78306 1jssA 224 84.91 d.129.3.2 71844 1pcxA 810 85.30 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 3canA 182 86.26 1l6rA 227 86.42 c.108.1.10 77768 2a8yA 270 87.33 3c5iA 369 88.13 1k47A 337 89.03 d.14.1.5,d.58.26.4 72040,72041 1f9aA 168 89.35 c.26.1.3 31602 2b81A 323 89.55 2pl5A 366 89.75