# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.69e-67 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 3.66e-48 c.55.3.10 120785 1si2A 149 2.36e-10 b.34.14.1 105569 2qvwA 756 0.02702 1jx6A 342 0.3282 c.93.1.1 67406 1gudA 288 1.401 c.93.1.1 83326 2hqbA 296 1.867 2fqxA 318 3.540 1dbqA 289 3.555 c.93.1.1 35666 2ioyA 283 4.377 1gca 309 4.918 2qy9A 309 5.047 1z15A 344 5.106 2qh8A 302 5.450 1rj9A 304 5.831 a.24.13.1,c.37.1.10 97553,97554 2qu7A 288 5.955 1u0mA 382 6.135 c.95.1.2,c.95.1.2 107557,107558 1bykA 255 6.317 c.93.1.1 35706 3d02A 303 6.696 2og2A 359 8.289 2nytA 190 8.473 2fvyA 309 11.11 c.93.1.1 134227 1jyeA 349 11.17 c.93.1.1 67455 8abp 306 11.38 2driA 271 12.34 c.93.1.1 35637 3b9qA 302 12.44 2qvcA 313 12.69 3c6qA 311 13.10 2dri 271 14.23 8abpA 306 14.27 c.93.1.1 35647 2qh9A 184 14.65 1tjyA 316 15.13 c.93.1.1 107062 2g2cA 167 15.36 c.57.1.1 134535 2rjoA 332 16.74 2iksA 293 17.65 2r8wA 332 18.10 1xdpA 687 18.98 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1e1oA 504 20.85 b.40.4.1,d.104.1.1 25258,40714 1rttA 193 21.52 c.23.5.4 105098 1u9yA 284 21.90 c.61.1.2,c.61.1.2 119655,119656 2ywiA 196 22.44 2c27A 315 23.24 d.108.1.1 129659 1zs9A 261 23.35 c.108.1.22 125600 1rypD 241 23.38 d.153.1.4 41935 1m1nB 522 23.72 c.92.2.3 78418 2fn9A 290 24.09 1twiA 434 24.10 b.49.2.3,c.1.6.1 107399,107400 1usgA 346 25.92 c.93.1.1 99864 2cjaA 522 26.09 1mkzA 172 29.74 c.57.1.1 84998 2purA 292 30.09 1rvv1 154 31.92 2yx1A 336 32.54 1iowA 306 34.20 c.30.1.2,d.142.1.1 31713,41481 1vgyA 393 34.71 c.56.5.4,d.58.19.1 100620,100621 1jftA 340 34.73 a.35.1.5,c.93.1.1 66652,66653 1r42A 615 35.36 d.92.1.5 96968 1rypF 233 35.55 d.153.1.4 41937 1vbuA 328 35.66 c.1.8.3 119963 2qtzA 539 35.72 1g6oA 330 36.01 c.37.1.11 32430 2gdjA 264 36.60 c.37.1.11 135018 2gnpA 266 37.05 3bzmA 431 37.82 2o20A 332 39.26 1ta8A 332 42.73 d.142.2.2 112375 1xpkC 388 43.66 c.95.1.2,c.95.1.2 115747,115748 2q62A 247 44.01 2c1iA 431 45.12 c.6.2.3,d.341.1.1 129636,129637 1rypG 244 45.61 d.153.1.4 41938 2g35A 100 45.68 b.55.1.5 134548 1y5eA 169 45.89 c.57.1.1 122632 1g0uC 243 45.94 d.153.1.4 41948 1vhoA 346 46.07 b.49.3.1,c.56.5.4 100694,100695 2c4wA 176 47.10 2d0bA 310 49.00 3c8cA 240 49.19 1qsaA 618 49.23 a.118.5.1,d.2.1.6 19182,36988 1td2A 287 49.27 c.72.1.5 106765 2fepA 289 52.57 2g4rA 160 52.66 1s4bP 674 52.89 d.92.1.5 105252 1l7mA 211 53.08 c.108.1.4 73664 2b4yA 271 54.36 c.31.1.5 127868 1xpmA 396 54.49 c.95.1.2,c.95.1.2 115759,115760 2o36A 674 55.31 2oap1 511 55.99 1jqnA 883 56.56 c.1.12.3 77159 2qwxA 231 57.71 1z2lA 423 59.03 c.56.5.4,d.58.19.1 124383,124384 2pt7A 330 59.16 1yarA 233 59.49 d.153.1.4 122837 1a8l 226 60.36 1xesA 413 61.40 1q1aA 289 62.30 c.31.1.5 95561 2fvgA 340 64.38 b.49.3.1,c.56.5.4 134201,134202 1knyA 253 64.75 a.24.16.1,d.218.1.1 75896,75897 1h1nA 305 66.24 c.1.8.3 70855 3bczA 293 66.73 1io2A 213 66.79 c.55.3.1 62612 2o55A 258 66.95 2abqA 306 68.37 c.72.1.1 126528 1mzjA 339 69.89 c.95.1.2,c.95.1.2 79700,79701 1rypE 242 70.02 d.153.1.4 41936 1iow 306 71.78 1qopA 268 73.26 c.1.2.4 28570 1n82A 331 73.26 c.1.8.3 91703 3d0cA 314 73.65 1yloA 348 74.43 b.49.3.1,c.56.5.4 123659,123660 1gtzA 156 75.06 c.23.13.1 70539 2qv7A 337 75.79 2pjkA 178 78.86 1ypxA 375 79.09 1c4oA 664 79.92 c.37.1.19,c.37.1.19 32415,32416 2z2uA 311 80.44 2frnA 278 80.94 c.66.1.47 133993 2vdxA 373 81.14 2atsA 292 81.35 c.1.10.1 127306 2fliA 220 81.47 c.1.2.2 133714 1nrjA 158 81.75 d.110.4.4 86124 2j3hA 345 82.64 2b82A 211 83.76 c.108.1.12 128057 1xcrA 316 85.26 d.290.1.2 121860 2hwkA 320 86.05 2citA 282 86.70 c.1.8.3 130499 2ebdA 309 88.19 1rifA 282 89.23 c.37.1.23 97507