# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.39e-59 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.86e-42 c.55.3.10 120785 1si2A 149 1.07e-10 b.34.14.1 105569 2qvwA 756 0.01547 1jx6A 342 0.2178 c.93.1.1 67406 2fqxA 318 0.4794 8abp 306 2.209 2fvyA 309 3.030 c.93.1.1 134227 2qh8A 302 3.445 2og2A 359 3.616 1zxxA 319 4.517 1gudA 288 4.756 c.93.1.1 83326 1mzjA 339 5.144 c.95.1.2,c.95.1.2 79700,79701 2qy9A 309 6.219 1u0mA 382 7.170 c.95.1.2,c.95.1.2 107557,107558 2hqbA 296 8.003 2gdjA 264 8.248 c.37.1.11 135018 2qh9A 184 8.723 2fliA 220 8.859 c.1.2.2 133714 1rrvA 416 9.018 c.87.1.5 105083 1z15A 344 11.59 2ioyA 283 11.65 1vbuA 328 12.72 c.1.8.3 119963 1u6eA 335 14.19 c.95.1.2,c.95.1.2 119568,119569 1pea 385 14.43 8abpA 306 14.51 c.93.1.1 35647 1xpmA 396 14.52 c.95.1.2,c.95.1.2 115759,115760 1rj9A 304 14.66 a.24.13.1,c.37.1.10 97553,97554 1jyeA 349 14.78 c.93.1.1 67455 2c4wA 176 16.19 1rttA 193 17.09 c.23.5.4 105098 1tjyA 316 19.43 c.93.1.1 107062 2jbwA 386 19.82 3d02A 303 20.18 2v9dA 343 22.31 1gtzA 156 24.31 c.23.13.1 70539 1usgA 346 24.91 c.93.1.1 99864 1m1nB 522 27.91 c.92.2.3 78418 2qghA 425 28.96 1yloA 348 29.34 b.49.3.1,c.56.5.4 123659,123660 2ywiA 196 30.78 1h1yA 228 30.78 c.1.2.2 76506 2fn9A 290 31.10 1gca 309 31.73 5nul 138 32.33 1hnjA 317 32.68 c.95.1.2,c.95.1.2 35969,35970 2r91A 286 33.30 1dbqA 289 33.50 c.93.1.1 35666 3c6qA 311 35.57 1rypD 241 37.85 d.153.1.4 41935 1m1nA 491 38.01 c.92.2.3 78417 1f74A 293 38.39 c.1.10.1 29079 1rifA 282 38.70 c.37.1.23 97507 3d0cA 314 38.76 1lrzA 426 38.90 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1qopA 268 40.14 c.1.2.4 28570 1cfr 285 40.72 1oneA 436 40.95 c.1.11.1,d.54.1.1 29200,38844 1xpkC 388 41.15 c.95.1.2,c.95.1.2 115747,115748 2g2cA 167 41.54 c.57.1.1 134535 1l6rA 227 41.80 c.108.1.10 77768 1f07A 321 42.31 c.1.16.3 59560 1w6tA 444 42.90 c.1.11.1,d.54.1.1 120670,120671 2glfA 450 44.42 1dpeA 507 44.96 c.94.1.1 35799 2purA 292 44.98 2q9uA 414 46.79 2i1qA 322 49.74 a.60.4.1,c.37.1.11 136984,136985 1rypF 233 51.33 d.153.1.4 41937 2z2uA 311 51.68 1xdpA 687 52.11 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1jndA 420 53.39 c.1.8.5,d.26.3.1 71757,71758 3b9qA 302 54.15 1xkyA 301 57.46 c.1.10.1 122094 1sjiA 350 58.64 1g2oA 268 58.65 c.56.2.1 60228 1va6A 518 59.90 d.128.1.4 113598 1h05A 146 62.00 c.23.13.1 76433 2pnqA 467 64.03 1mkzA 172 64.20 c.57.1.1 84998 2p8tA 200 66.43 2dri 271 68.60 2h4tA 626 69.23 2csuA 457 69.72 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1t70A 255 70.47 d.159.1.9 112275 1rvv1 154 71.87 2i4iA 417 72.40 1r8eA 278 72.68 a.6.1.3,d.60.1.1 104843,104844 1g0uC 243 72.75 d.153.1.4 41948 2pt7A 330 73.53 2pjkA 178 73.56 1o5kA 306 74.14 c.1.10.1 92504 1arb 268 74.29 2halA 212 75.03 b.47.1.4 136289 1bykA 255 75.23 c.93.1.1 35706 2bjbA 462 76.49 1wu7A 434 76.74 c.51.1.1,d.104.1.1 121275,121276 2qvcA 313 78.12 2ijzA 428 78.37 2rfgA 297 79.55 2c5sA 413 79.74 c.26.2.6,d.308.1.1 129950,129951 1qh8B 519 79.99 c.92.2.3 35634 1r85A 379 81.02 c.1.8.3 104839 2yxxA 386 81.77 1y5eA 169 82.51 c.57.1.1 122632 2atsA 292 83.82 c.1.10.1 127306 1tedA 393 86.01 c.95.1.2 106807 1w32A 348 86.38 c.1.8.3 114120 2rjoA 332 87.04 1w5qA 337 87.31 2vapA 364 88.07 2q62A 247 88.80 2qfmA 364 89.72