# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.29e-22 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.88e-16 c.55.3.10 120785 1si2A 149 0.05836 b.34.14.1 105569 1xdpA 687 2.257 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2og2A 359 3.375 2d69A 430 3.405 c.1.14.1,d.58.9.1 131292,131293 1orvA 728 3.962 b.70.3.1,c.69.1.24 87354,87355 2hu5A 582 4.253 b.69.7.2,c.69.1.33 136763,136764 1fc4A 401 4.262 c.67.1.4 59760 1j5sA 463 6.574 c.1.9.8 71580 1b8aA 438 10.61 b.40.4.1,d.104.1.1 25244,40765 2qvwA 756 10.84 1h2wA 710 11.17 b.69.7.1,c.69.1.4 76596,76597 2d5lA 706 11.46 2om6A 235 11.88 3bjuA 521 13.01 1zu0A 529 13.24 2bklA 695 14.87 2glfA 450 15.44 1gudA 288 17.38 c.93.1.1 83326 2c9hA 444 17.63 2zadA 345 17.68 1x54A 434 19.64 2gk6A 624 20.76 2ah5A 210 21.16 c.108.1.6 126742 2dexX 671 22.00 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 2qeeA 437 22.41 2jhnA 295 24.50 2fvyA 309 24.93 c.93.1.1 134227 1jx6A 342 26.56 c.93.1.1 67406 1eovA 487 26.63 b.40.4.1,d.104.1.1 25239,40760 2o7iA 592 27.01 2gtqA 867 27.26 1vjoA 393 27.86 c.67.1.3 100827 3ciwA 348 28.18 2fn9A 290 28.22 2gokA 429 29.44 1vr5A 547 30.08 c.94.1.1 120437 2vgnA 386 30.77 1m7yA 435 31.52 c.67.1.4 78761 2hufA 393 31.93 2bywA 418 32.69 c.95.1.1,c.95.1.1 129498,129499 3b9qA 302 34.44 1o08A 221 34.83 c.108.1.6 86525 2c4wA 176 34.84 2c1iA 431 35.20 c.6.2.3,d.341.1.1 129636,129637 1kkhA 317 36.55 d.14.1.5,d.58.26.3 72645,72646 2qezA 455 38.33 2d0bA 310 41.18 1ykwA 435 42.04 c.1.14.1,d.58.9.1 123565,123566 2hdoA 209 43.14 c.108.1.6 136345 1dxy 333 43.66 1vqqA 646 44.05 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2z3zA 706 44.67 2nu8B 388 44.85 2q01A 497 45.98 1gca 309 46.42 3csuA 310 46.54 c.78.1.1,c.78.1.1 35094,35095 2ffiA 288 46.77 c.1.9.15 133385 2oycA 306 47.08 1pswA 348 47.24 c.87.1.7 88287 1ymqA 261 47.44 c.108.1.10 123707 2go7A 207 47.66 c.108.1.6 135434 1mzjA 339 47.72 c.95.1.2,c.95.1.2 79700,79701 2pnkA 428 48.00 2hszA 243 48.30 c.108.1.6 136726 1h05A 146 48.79 c.23.13.1 76433 3ce9A 354 49.08 2qh8A 302 49.94 2rbkA 261 51.31 3canA 182 51.57 1an9A 340 51.82 c.4.1.2,d.16.1.3 30617,37904 1lt8A 406 54.56 c.1.26.1 78186 1rlmA 271 55.18 c.108.1.10 111860 8abp 306 55.83 1vmaA 306 58.09 a.24.13.1,c.37.1.10 108887,108888 1hnjA 317 59.99 c.95.1.2,c.95.1.2 35969,35970 2oqyA 391 60.58 2dq6A 870 64.00 1fc6A 388 64.32 b.36.1.3,c.14.1.2 64738,64739 1uwvA 433 64.86 b.40.4.12,c.66.1.40 100128,100129 1ynuA 473 65.14 c.67.1.4 123762 1dxyA 333 66.56 c.2.1.4,c.23.12.1 30094,31354 1o0xA 262 67.94 d.127.1.1 80755 2o7sA 523 68.05 1zs9A 261 68.94 c.108.1.22 125600 2vbaA 406 69.85 1wstA 417 70.16 c.67.1.1 121244 1p80A 753 70.37 c.23.16.3,e.5.1.1 94337,94338 2ebdA 309 70.77 1gtzA 156 72.13 c.23.13.1 70539 2pibA 216 73.07 2o7cA 398 76.01 2gptA 523 76.32 2f2aB 483 77.58 a.182.1.2,d.128.1.5 132802,132803 1v47A 349 78.05 b.122.1.3,c.26.1.5 100292,100293 1l0wA 580 78.98 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2c4nA 250 79.50 c.108.1.14 129837 2g09A 297 80.05 1sdoA 203 83.43 c.52.1.21 98809 1rkqA 282 86.11 c.108.1.10 97621 2ewfA 610 87.17 2pr7A 137 87.32 2dejA 350 88.38