Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	4.3863e-96	1u04A/T0487-1u04A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1w9hA	9.6589e-58	1w9hA/T0487-1w9hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1r4kA	1.2039e-20	1r4kA/T0487-1r4kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1
1si2A	1.1170e-15	1si2A/T0487-1si2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1
2qh9A	1.1524e-01	2qh9A/T0487-2qh9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jx6A	1.4227e-01	1jx6A/T0487-1jx6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1gudA	1.4955e+00	1gudA/T0487-1gudA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1lylA	4.8710e+00	1lylA/T0487-1lylA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.1 d.104.1.1
1tjyA	6.0718e+00	1tjyA/T0487-1tjyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
2dri	6.1034e+00	2dri/T0487-2dri-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
8abp	7.0490e+00	8abp/T0487-8abp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mkzA	7.0610e+00	1mkzA/T0487-1mkzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.57.1.1
2hqbA	1.2245e+01	2hqbA/T0487-2hqbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ch4A	1.4040e+01	2ch4A/T0487-2ch4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.7.1 d.122.1.3
1xzoA	1.8201e+01	1xzoA/T0487-1xzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.10
1e1oA	1.8366e+01	1e1oA/T0487-1e1oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.1 d.104.1.1
1dbqA	1.8389e+01	1dbqA/T0487-1dbqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1oi0A	1.8532e+01	1oi0A/T0487-1oi0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fqxA	2.0191e+01	2fqxA/T0487-2fqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vm8A	2.1539e+01	1vm8A/T0487-1vm8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.68.1.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001