# List of top-scoring protein chains for T0487.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yvuA 706 1.04e-35 b.34.14.1,c.55.3.10 124120,124121 1u04A 771 6.43e-29 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 4.89e-22 c.55.3.10 120785 1r4kA 169 2.76e-20 b.34.14.1 96997 1si2A 149 6.64e-20 b.34.14.1 105569 1vynA 143 2.21e-10 b.34.14.1 108904 1t2rA 123 5.90e-08 b.34.14.1 106286 1r6zA 509 1.58e-06 b.34.14.1,c.94.1.1 97169,97170 2qvwA 756 0.01204 1infA 390 2.937 b.68.1.1 27602 1rt8A 513 3.168 a.40.1.1 105095 2z6eA 419 4.895 1xi3A 215 5.027 c.1.3.1 109601 2a97A 439 7.977 2qk1A 249 9.181 1b9vA 390 10.62 b.68.1.1 27603 1vcjA 389 10.65 b.68.1.1 100559 1bf6A 291 10.77 c.1.9.3 29065 2c2vC 142 11.24 d.20.1.1 129687 2j1dG 483 11.37 1s2oA 244 11.54 c.108.1.10 118846 2g8gA 524 13.97 3c5mA 396 16.00 1um0A 365 16.87 d.258.1.1 107942 2du7A 549 17.50 2hlwA 170 20.90 2a8aA 439 22.59 1zauA 328 23.61 1eu8A 409 25.06 c.94.1.1 59502 2q9uA 414 25.79 3bjuA 521 28.79 2oblA 347 29.48 3brdA 477 31.74 3brfA 478 31.88 1x9nA 688 33.39 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1oxzA 186 33.82 a.7.8.1 87542 2a4dA 160 34.95 d.20.1.1 126152 2dh5A 397 36.46 2rliA 171 37.92 2pi2A 270 39.73 1dl2A 511 39.94 a.102.2.1 18844 1nscA 390 45.25 b.68.1.1 27591 1v3iA 495 47.25 c.1.8.1 108304 1nyrA 645 47.41 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 92354,92355,92356,92357 1q6dA 495 47.82 c.1.8.1 95971 2qsxA 218 47.94 2z5sM 140 48.15 3bbnB 231 50.52 1q6eA 495 51.77 c.1.8.1 95972 1v3hA 495 53.88 c.1.8.1 108303 1wdpA 495 54.24 c.1.8.1 120907 1ua2A 346 54.55 d.144.1.7 113251 1wdrA 495 54.81 c.1.8.1 120909 1y1uA 585 55.21 2pcjA 224 55.76 2j9zB 397 57.38 1ydpA 275 58.52 2ajuH 219 58.57 2dypA 277 58.88 1em8B 112 60.31 c.126.1.1 90458 1qksA 567 60.50 a.3.1.2,b.70.2.1 15951,27710 1e2rA 567 61.01 a.3.1.2,b.70.2.1 15953,27712 2d31A 276 62.34 1kfcB 397 62.43 c.79.1.1 77372 1bybA 495 62.49 c.1.8.1 28790 1qopB 396 62.54 c.79.1.1 35270 1hj5A 567 62.79 a.3.1.2,b.70.2.1 15927,27684 1k8yB 396 63.00 c.79.1.1 72184 1axkA 394 64.05 b.29.1.2,b.29.1.11 24181,24315 1btcA 491 65.87 c.1.8.1 28791 2pg0A 385 66.24 2v7bA 529 66.40 2ffhA 425 66.72 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1wdsA 495 67.58 c.1.8.1 120910 2odrD 685 67.90 2ekcA 262 67.96 2j9yB 397 68.22 2odrB 648 69.36 1v5vA 401 69.88 b.44.2.1,d.250.1.1 113539,113540 2dqxA 495 69.93 2g80A 253 71.04 c.108.1.22 134741 1iicA 422 72.03 d.108.1.2,d.108.1.2 62422,62423 2odrA 665 72.36 1qoqB 396 73.74 c.79.1.1 35271 1fuyB 396 73.89 c.79.1.1 35279 1beuB 397 75.91 c.79.1.1 35274 2odrC 701 78.16 2cleB 396 78.66 c.79.1.1 130573 1edgA 380 78.71 c.1.8.3 28807 1ttqB 397 78.95 c.79.1.1 35268 1ubsB 397 79.51 c.79.1.1 35273 1z7dA 433 82.00 c.67.1.4 124600 2tysB 397 82.64 c.79.1.1 35272 1k1xA 659 85.38 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281