# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.09e-105 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.57e-69 c.55.3.10 120785 1r4kA 169 2.13e-23 b.34.14.1 96997 1si2A 149 1.01e-17 b.34.14.1 105569 1jx6A 342 0.004751 c.93.1.1 67406 2qh9A 184 0.005413 1mkzA 172 0.7724 c.57.1.1 84998 1gudA 288 2.519 c.93.1.1 83326 1lylA 504 2.576 b.40.4.1,d.104.1.1 25261,40717 2ch4A 320 3.294 b.40.7.1,d.122.1.3 130447,130448 2dri 271 4.379 1tjyA 316 5.896 c.93.1.1 107062 1mdbA 539 7.650 e.23.1.1 79008 1xzoA 174 7.780 c.47.1.10 122474 1st9A 143 9.007 c.47.1.10 98987 1kfcA 268 9.842 c.1.2.4 77371 1e1oA 504 11.11 b.40.4.1,d.104.1.1 25258,40714 1dbqA 289 11.65 c.93.1.1 35666 8abp 306 13.49 3cpxA 321 13.72 2fqxA 318 14.99 2afcA 168 15.48 c.50.1.2 126676 2hqbA 296 15.80 1f6yA 262 17.59 c.1.21.2 29673 1k4mA 213 18.48 c.26.1.3 77258 1cozA 129 18.56 c.26.1.2 31598 1f0iA 504 18.62 d.136.1.2,d.136.1.2 59566,59567 1v71A 323 20.31 c.79.1.1 119859 1vheA 373 20.66 b.49.3.1,c.56.5.4 100669,100670 2nx2A 181 20.90 1adjA 421 20.97 c.51.1.1,d.104.1.1 33188,40737 1qgoA 264 21.45 c.92.1.2 35596 2dxnA 274 22.55 1fnnA 389 23.04 a.4.5.11,c.37.1.20 16129,32426 2fg1A 158 23.47 c.50.1.2 133400 2dx6A 159 23.66 2qv7A 337 24.02 2g4rA 160 24.74 2h8eA 120 25.63 1dorA 311 26.48 c.1.4.1 28595 1r0vA 305 26.61 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1vm8A 534 27.98 c.68.1.5 113670 1amuA 563 28.32 e.23.1.1 43351 1zr5A 214 28.83 c.50.1.2 125525 8abpA 306 29.49 c.93.1.1 35647 1ep3A 311 29.68 c.1.4.1 28597 2vdxA 373 29.72 2vupA 190 30.51 1yumA 242 30.91 2ioyA 283 30.97 1r26A 125 30.98 c.47.1.1 96847 3c7bB 366 31.67 1q77A 138 31.68 c.26.2.4 96023 1rypC 244 31.71 d.153.1.4 41934 1gtzA 156 32.61 c.23.13.1 70539 1f52A 468 32.95 d.15.9.1,d.128.1.1 37839,41169 1i1nA 226 33.04 c.66.1.7 71102 1m0wA 491 33.22 c.30.1.4,d.142.1.6 78363,78364 2arkA 188 33.79 c.23.5.8 127202 2zogA 479 33.81 2i6jA 161 34.56 3daaA 277 34.85 e.17.1.1 43272 2o2gA 223 35.54 3pte 349 35.70 2g2cA 167 38.01 c.57.1.1 134535 2bvcA 486 38.36 d.15.9.1,d.128.1.1 129243,129244 2uuuA 584 38.57 1s2dA 167 38.91 c.23.14.1 98377 2i06A 309 39.26 1f8yA 157 39.33 c.23.14.1 31395 1u0tA 307 39.39 e.52.1.1 107567 1d0iA 156 39.88 c.23.13.1 31383 2bm8A 236 40.19 c.66.1.50 128771 1zsxA 347 40.31 1qgdA 662 40.77 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1bykA 255 42.03 c.93.1.1 35706 2gzxA 265 42.67 3c7bA 417 42.74 1lci 550 43.74 1qopB 396 43.86 c.79.1.1 35270 1c4zA 358 44.36 d.148.1.1 41766 2ywiA 196 44.47 1rypL 212 44.58 d.153.1.4 41880 1efyA 350 47.31 a.41.1.1,d.166.1.2 17413,42275 3chy 128 48.93 1yd9A 193 49.09 c.50.1.2 122976 2q9oA 559 51.50 1xwyA 264 51.80 c.1.9.12 122411 1jx7A 117 52.04 c.114.1.1 77195 2cxyA 125 52.23 1fa0A 537 52.52 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 2a5lA 200 53.16 c.23.5.8 126176 1jubA 311 53.34 c.1.4.1 90908 1h4vB 421 54.55 c.51.1.1,d.104.1.1 60624,60625 1zxxA 319 54.80 1sekA 378 55.09 e.1.1.1 42675 2g50A 530 56.21 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1ig8A 486 56.28 c.55.1.3,c.55.1.3 64746,64747 1j8yF 297 56.44 a.24.13.1,c.37.1.10 62747,62748 1rypA 243 57.17 d.153.1.4 41932 2yvqA 143 58.01 3by5A 155 59.49 1jl1A 155 59.80 c.55.3.1 66821 1u4nA 310 60.90 c.69.1.2 113021 2fy6A 143 60.93 c.47.1.10 134344 1q8rA 120 61.60 d.79.6.1 96225 1jyoA 130 61.62 d.198.1.1 67483 2dhqA 146 61.72 c.23.13.1 31382 1oftA 161 62.46 c.37.1.22 86968 1hqkA 154 63.86 c.16.1.1 65902 2fdxA 138 64.60 c.23.5.1 31192 2c4wA 176 64.70 1noxA 205 64.91 d.90.1.1 40242 1evlA 401 65.30 c.51.1.1,d.104.1.1 33202,40751 1sdeA 347 65.38 e.3.1.1 112073 2nxfA 322 65.52 1pwgA 349 66.25 e.3.1.1 104340 2iwaA 266 66.34 1rypF 233 66.35 d.153.1.4 41937 1f75A 249 68.22 c.101.1.1 59662 2b5gA 171 69.17 d.108.1.1 127892 1yqsA 349 69.22 e.3.1.1 123899 1r9jA 673 70.35 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2yvtA 260 71.08 1s7kA 182 72.05 d.108.1.1 118878 2qk1A 249 72.41 1h05A 146 72.70 c.23.13.1 76433 1v95A 130 75.45 c.51.1.1 108435 1ekfA 365 75.54 e.17.1.1 59445 1wrvA 308 76.28 1t5hX 504 76.63 e.23.1.1 106449 1xmxA 385 78.42 c.52.1.26 115568 2ehbD 143 78.48 1a0gA 282 80.14 e.17.1.1 43276 1nj4A 363 81.30 b.105.1.1,e.3.1.1 80545,80546 1zc6A 305 83.28 c.55.1.5,c.55.1.5 124888,124889 2dorA 311 83.36 c.1.4.1 28593 2pd0A 223 84.23 2gn0A 342 84.62 1qopA 268 85.31 c.1.2.4 28570 1o6gA 710 86.09 b.69.7.1,c.69.1.4 81087,81088 1th8B 116 86.38 c.13.2.1 106909 2ou3A 161 87.79 1atiA 505 89.94 c.51.1.1,d.104.1.1 33196,40745 2ohhA 404 89.99