# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 6.90e-106 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.46e-69 c.55.3.10 120785 1r4kA 169 3.08e-22 b.34.14.1 96997 1si2A 149 1.32e-17 b.34.14.1 105569 1jx6A 342 0.005436 c.93.1.1 67406 2qh9A 184 0.009933 1mkzA 172 1.019 c.57.1.1 84998 1vm8A 534 2.804 c.68.1.5 113670 1lylA 504 2.917 b.40.4.1,d.104.1.1 25261,40717 1gudA 288 2.995 c.93.1.1 83326 2hqbA 296 4.891 2qv7A 337 6.287 1e1oA 504 7.225 b.40.4.1,d.104.1.1 25258,40714 2bm8A 236 7.745 c.66.1.50 128771 1o6gA 710 8.758 b.69.7.1,c.69.1.4 81087,81088 2dxnA 274 10.16 8abp 306 10.77 1i1nA 226 11.15 c.66.1.7 71102 1tjyA 316 11.42 c.93.1.1 107062 1cozA 129 12.41 c.26.1.2 31598 2ch4A 320 12.54 b.40.7.1,d.122.1.3 130447,130448 2bvcA 486 13.44 d.15.9.1,d.128.1.1 129243,129244 1qunB 279 13.74 b.2.3.2,b.2.3.2 22411,22412 1st9A 143 14.98 c.47.1.10 98987 2dri 271 15.28 1fa0A 537 15.37 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1m0wA 491 16.37 c.30.1.4,d.142.1.6 78363,78364 1vheA 373 16.78 b.49.3.1,c.56.5.4 100669,100670 2vdxA 373 17.19 1xzoA 174 17.24 c.47.1.10 122474 1ig8A 486 18.20 c.55.1.3,c.55.1.3 64746,64747 1qgoA 264 18.39 c.92.1.2 35596 1v71A 323 18.92 c.79.1.1 119859 1fnnA 389 18.97 a.4.5.11,c.37.1.20 16129,32426 1qopB 396 19.30 c.79.1.1 35270 1v95A 130 20.76 c.51.1.1 108435 2vupA 190 21.52 1sekA 378 22.12 e.1.1.1 42675 2fqxA 318 23.33 2g4rA 160 23.53 3d3aA 612 23.93 1fftB 315 24.34 b.6.1.2,f.17.2.1 23025,43628 1q77A 138 26.83 c.26.2.4 96023 1adjA 421 27.70 c.51.1.1,d.104.1.1 33188,40737 2qwxA 231 27.85 1qsmA 152 28.86 d.108.1.1 40808 1lci 550 29.03 1f8yA 157 30.96 c.23.14.1 31395 2o2gA 223 31.14 1mdbA 539 32.76 e.23.1.1 79008 1o12A 376 33.02 b.92.1.5,c.1.9.10 80758,80759 3cpxA 321 33.15 1klfB 279 33.21 b.2.3.2,b.2.3.2 72684,72685 1kfcA 268 33.44 c.1.2.4 77371 2afcA 168 33.74 c.50.1.2 126676 2i6jA 161 33.82 2arkA 188 35.14 c.23.5.8 127202 2i06A 309 35.46 1vkrA 125 35.52 c.44.2.1 108689 2nx2A 181 35.88 2ohhA 404 36.55 1bykA 255 37.06 c.93.1.1 35706 1jubA 311 37.46 c.1.4.1 90908 2ioyA 283 37.91 3pte 349 38.28 1h4vB 421 38.98 c.51.1.1,d.104.1.1 60624,60625 1dorA 311 40.40 c.1.4.1 28595 2pt7A 330 40.95 1k4mA 213 41.20 c.26.1.3 77258 1f52A 468 41.27 d.15.9.1,d.128.1.1 37839,41169 2ywiA 196 41.45 1r0vA 305 41.53 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1f0iA 504 41.68 d.136.1.2,d.136.1.2 59566,59567 1zr5A 214 43.58 c.50.1.2 125525 2shpA 525 44.34 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2fg1A 158 45.53 c.50.1.2 133400 2j01Q 141 45.61 1s2dA 167 46.35 c.23.14.1 98377 1gakA 141 47.45 a.19.1.1 16415 1jx7A 117 47.54 c.114.1.1 77195 1k3eA 156 48.78 d.198.1.1 68103 1j8yF 297 49.54 a.24.13.1,c.37.1.10 62747,62748 1zclA 180 50.02 1f6yA 262 50.20 c.1.21.2 29673 1rypE 242 51.10 d.153.1.4 41936 1vpt 348 53.88 1nj4A 363 54.30 b.105.1.1,e.3.1.1 80545,80546 1rypC 244 55.10 d.153.1.4 41934 2dx6A 159 56.02 1qtwA 285 56.56 c.1.15.1 29392 2q4vA 170 57.07 d.108.1.1 139878 1qsoA 149 57.41 d.108.1.1 40812 2fdxA 138 57.44 c.23.5.1 31192 2obiA 183 58.38 2c4wA 176 58.74 1gtzA 156 58.75 c.23.13.1 70539 1yumA 242 60.24 2g2cA 167 60.60 c.57.1.1 134535 1i5gA 144 64.91 c.47.1.10 61784 2yvqA 143 65.54 1yxaA 398 66.04 1evlA 401 66.09 c.51.1.1,d.104.1.1 33202,40751 2gn0A 342 66.15 8abpA 306 66.40 c.93.1.1 35647 1ep3A 311 67.09 c.1.4.1 28597 1rhyA 202 67.19 d.14.1.9,d.14.1.9 97491,97492 3daaA 277 67.60 e.17.1.1 43272 2gzxA 265 69.15 1d0iA 156 71.34 c.23.13.1 31383 1pjaA 302 71.53 c.69.1.13 94758 1yqsA 349 71.88 e.3.1.1 123899 1yd9A 193 72.28 c.50.1.2 122976 1ug0A 88 73.25 a.217.1.1 107822 1e5dA 402 73.77 c.23.5.1,d.157.1.3 31208,42061 1twiA 434 74.46 b.49.2.3,c.1.6.1 107399,107400 2hdwA 367 75.10 1noxA 205 75.28 d.90.1.1 40242 1atiA 505 75.37 c.51.1.1,d.104.1.1 33196,40745 1r26A 125 76.01 c.47.1.1 96847 1sdeA 347 76.62 e.3.1.1 112073 1vptA 348 77.89 c.66.1.25 34207 1qgdA 662 79.56 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1amuA 563 80.13 e.23.1.1 43351 2zogA 479 80.18 1jl1A 155 80.20 c.55.3.1 66821 2uuuA 584 81.58 2yhx 457 82.95 1uozA 315 83.25 c.6.1.1 113354 1f75A 249 85.69 c.101.1.1 59662 2p1zA 180 85.91 2h30A 164 86.13 1r9jA 673 86.19 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1hdoA 206 86.26 c.2.1.2 60965 1rypF 233 86.38 d.153.1.4 41937 2qdxA 257 86.68 1a8pA 258 87.03 b.43.4.2,c.25.1.1 25654,31544 2qipA 165 87.84 2r16A 182 88.37 2gtqA 867 88.98 1zsxA 347 89.09