# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 7.53e-111 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.44e-72 c.55.3.10 120785 1r4kA 169 5.83e-23 b.34.14.1 96997 1si2A 149 1.42e-18 b.34.14.1 105569 1jx6A 342 0.001770 c.93.1.1 67406 2qh9A 184 0.08074 2ch4A 320 0.1345 b.40.7.1,d.122.1.3 130447,130448 1qgoA 264 0.7408 c.92.1.2 35596 1vheA 373 1.759 b.49.3.1,c.56.5.4 100669,100670 1lylA 504 2.069 b.40.4.1,d.104.1.1 25261,40717 8abp 306 2.231 1tjyA 316 2.646 c.93.1.1 107062 1gudA 288 2.972 c.93.1.1 83326 1mkzA 172 3.043 c.57.1.1 84998 2dri 271 3.385 2qv7A 337 3.831 1q77A 138 4.312 c.26.2.4 96023 2g50A 530 4.940 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1dbqA 289 4.963 c.93.1.1 35666 1a49A 530 5.179 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1qsmA 152 5.418 d.108.1.1 40808 1xzoA 174 5.687 c.47.1.10 122474 2dt8A 280 5.990 2fdxA 138 8.035 c.23.5.1 31192 1v95A 130 8.462 c.51.1.1 108435 2fqxA 318 8.500 1fnnA 389 9.679 a.4.5.11,c.37.1.20 16129,32426 1sekA 378 9.889 e.1.1.1 42675 1e0tA 470 10.85 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1qsoA 149 11.32 d.108.1.1 40812 2nxfA 322 13.06 1kfcA 268 13.08 c.1.2.4 77371 1bykA 255 13.82 c.93.1.1 35706 1adjA 421 14.82 c.51.1.1,d.104.1.1 33188,40737 2zogA 479 15.42 2hqbA 296 15.48 2vdxA 373 15.57 2ywiA 196 16.36 1e1oA 504 20.24 b.40.4.1,d.104.1.1 25258,40714 1rypC 244 20.91 d.153.1.4 41934 2o2gA 223 21.05 1fh9A 312 21.17 c.1.8.3 28913 1u0tA 307 21.98 e.52.1.1 107567 1zxxA 319 22.79 1gtzA 156 23.31 c.23.13.1 70539 1tv8A 340 23.39 c.1.28.3 107352 1oftA 161 23.56 c.37.1.22 86968 1ecpA 238 23.75 c.56.2.1 33775 1pnsC 206 23.98 i.1.1.1 88170 8abpA 306 24.54 c.93.1.1 35647 3by5A 155 25.30 3bl6A 230 25.77 1gca 309 25.80 1yxaA 398 26.15 1i58A 189 26.87 d.122.1.3 61773 1jy1A 464 26.91 d.136.1.3,d.136.1.3 67438,67439 2yvtA 260 27.16 1evlA 401 28.23 c.51.1.1,d.104.1.1 33202,40751 2qwxA 231 28.39 1f6yA 262 28.43 c.1.21.2 29673 1kb9B 352 28.53 d.185.1.1,d.185.1.1 77313,77314 5nul 138 29.48 1s3zA 165 29.73 d.108.1.1 105250 1xyzA 347 30.98 c.1.8.3 28804 1twiA 434 31.04 b.49.2.3,c.1.6.1 107399,107400 1mdbA 539 31.06 e.23.1.1 79008 1r8eA 278 31.24 a.6.1.3,d.60.1.1 104843,104844 1rypL 212 31.39 d.153.1.4 41880 1o9gA 250 31.41 c.66.1.29 86692 2gy9C 206 31.48 2pefA 373 31.73 1zclA 180 32.26 2nx2A 181 32.36 1rypA 243 33.79 d.153.1.4 41932 1vgjA 184 33.82 2g4rA 160 34.04 2a15A 139 35.38 d.17.4.3 125973 1lci 550 36.17 2vgfA 528 36.37 1tlfA 301 36.85 c.93.1.1 35687 2fg1A 158 36.89 c.50.1.2 133400 2dhqA 146 36.94 c.23.13.1 31382 1bowA 159 37.25 d.60.1.1 39528 1vkcA 158 37.91 d.108.1.1 113663 1f4pA 147 37.92 c.23.5.1 59651 2bvcA 486 38.27 d.15.9.1,d.128.1.1 129243,129244 2q4vA 170 38.44 d.108.1.1 139878 1st9A 143 38.81 c.47.1.10 98987 2qipA 165 39.54 2qdxA 257 39.89 1i1nA 226 39.98 c.66.1.7 71102 1yroB 286 41.12 c.68.1.2 123932 1id0A 152 41.44 d.122.1.3 66111 1u4nA 310 41.70 c.69.1.2 113021 2dxqA 150 41.72 2vgbA 528 41.85 2r16A 182 42.49 2arrA 382 44.29 3pte 349 44.31 1f75A 249 44.98 c.101.1.1 59662 2b5gA 171 45.69 d.108.1.1 127892 2vgiA 528 45.88 1ezvB 352 46.00 d.185.1.1,d.185.1.1 59543,59544 2c4wA 176 46.61 1g0uC 243 46.85 d.153.1.4 41948 1yarA 233 47.24 d.153.1.4 122837 1u3dA 509 47.77 a.99.1.1,c.28.1.1 107638,107639 1d0iA 156 47.90 c.23.13.1 31383 1gakA 141 47.92 a.19.1.1 16415 1gz0A 253 48.05 c.116.1.1,d.79.3.3 76391,76392 1a04A 215 48.25 a.4.6.2,c.23.1.1 16234,31089 1zq7A 207 49.50 d.309.1.1 125501 2vggA 528 49.73 5nulA 138 49.86 c.23.5.1 31191 2v95A 371 50.20 1rypF 233 52.25 d.153.1.4 41937 2ioyA 283 52.26 1rlhA 173 52.28 d.256.1.1 97646 2f06A 144 53.06 d.58.18.11,d.58.18.11 132652,132653 2uuuA 584 53.42 2yvqA 143 53.69 1f52A 468 54.51 d.15.9.1,d.128.1.1 37839,41169 1uf3A 228 55.18 d.159.1.6 99317 1jyoA 130 55.32 d.198.1.1 67483 2dxnA 274 55.61 2obiA 183 56.24 1xmxA 385 56.30 c.52.1.26 115568 1f0iA 504 59.54 d.136.1.2,d.136.1.2 59566,59567 1p1cA 199 60.01 c.66.1.16 87669 1sdeA 347 60.55 e.3.1.1 112073 1a8pA 258 60.63 b.43.4.2,c.25.1.1 25654,31544 1usgA 346 62.08 c.93.1.1 99864 2d5rA 252 62.20 1rypE 242 63.40 d.153.1.4 41936 1qtqA 553 64.65 b.53.1.2,c.26.1.1 26940,31579 1vhsA 175 65.25 d.108.1.1 100698 1k77A 260 67.21 c.1.15.5 72096 1wekA 217 67.88 c.129.1.1 114553 2vqeC 239 68.67 2fy7A 287 68.75 1a4mA 349 68.85 c.1.9.1 29014 2vupA 190 71.26 1mk4A 157 71.83 d.108.1.1 84979 2h8eA 120 72.37 1kgsA 225 72.52 a.4.6.1,c.23.1.1 68596,68597 1vs5C 233 72.86 1sviA 195 73.46 c.37.1.8 106048 2fvgA 340 74.14 b.49.3.1,c.56.5.4 134201,134202 1j8yF 297 74.87 a.24.13.1,c.37.1.10 62747,62748 1rypH 205 75.40 d.153.1.4 41876 1hqkA 154 75.58 c.16.1.1 65902 1eejA 216 76.05 c.47.1.9,d.17.3.1 33057,38071 1vicA 262 76.36 c.68.1.13 100756 1q8rA 120 78.27 d.79.6.1 96225 1m0wA 491 79.38 c.30.1.4,d.142.1.6 78363,78364 1byqA 228 79.65 d.122.1.1 41100 1tufA 434 79.83 b.49.2.3,c.1.6.1 107335,107336 1yvoA 172 79.91 d.108.1.1 124106 1b8oA 284 81.04 c.56.2.1 33762 2tysA 268 81.18 c.1.2.4 28572 2as0A 396 81.28 b.122.1.9,c.66.1.51 127227,127228 1o12A 376 81.95 b.92.1.5,c.1.9.10 80758,80759 2liv 344 81.96 1cozA 129 82.87 c.26.1.2 31598 1ls1A 295 83.25 a.24.13.1,c.37.1.10 78170,78171 2fi1A 190 83.63 c.108.1.3 133508 1vpt 348 83.88 1r26A 125 84.38 c.47.1.1 96847 1yqsA 349 84.74 e.3.1.1 123899 1h05A 146 85.03 c.23.13.1 76433 2arkA 188 85.05 c.23.5.8 127202 1jjfA 268 85.06 c.69.1.2 66765 1rypD 241 86.69 d.153.1.4 41935 2ivmA 150 86.91 3cpxA 321 87.34 1pfkA 320 87.80 c.89.1.1 35575 2a5lA 200 88.30 c.23.5.8 126176 1cs0A 1073 88.44 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2driA 271 88.58 c.93.1.1 35637 1w9yA 319 88.73 b.82.2.1 120801 1yqhA 109 88.90 d.58.48.1 123886 1jv1A 505 89.01 c.68.1.5 71892 2c2aA 258 89.26 a.30.2.1,d.122.1.3 129662,129663