# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.04e-118 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 6.42e-76 c.55.3.10 120785 1r4kA 169 2.42e-24 b.34.14.1 96997 1si2A 149 1.35e-18 b.34.14.1 105569 1jx6A 342 0.008602 c.93.1.1 67406 2qh9A 184 0.009500 1lylA 504 0.4099 b.40.4.1,d.104.1.1 25261,40717 1qgoA 264 0.5677 c.92.1.2 35596 1gudA 288 0.7274 c.93.1.1 83326 1e1oA 504 1.644 b.40.4.1,d.104.1.1 25258,40714 1mkzA 172 2.248 c.57.1.1 84998 2bm8A 236 2.569 c.66.1.50 128771 2ch4A 320 2.682 b.40.7.1,d.122.1.3 130447,130448 8abp 306 2.853 2dri 271 3.769 1kfcA 268 4.825 c.1.2.4 77371 1zrhA 274 5.829 1vm8A 534 6.898 c.68.1.5 113670 1tjyA 316 9.095 c.93.1.1 107062 2fg1A 158 9.203 c.50.1.2 133400 2qv7A 337 9.767 1xzoA 174 10.29 c.47.1.10 122474 1adjA 421 10.83 c.51.1.1,d.104.1.1 33188,40737 1q77A 138 11.12 c.26.2.4 96023 1f52A 468 12.57 d.15.9.1,d.128.1.1 37839,41169 2fdxA 138 13.43 c.23.5.1 31192 8abpA 306 13.48 c.93.1.1 35647 1u0tA 307 13.92 e.52.1.1 107567 1mdbA 539 15.31 e.23.1.1 79008 1dbqA 289 15.44 c.93.1.1 35666 1rypE 242 16.71 d.153.1.4 41936 2arkA 188 18.19 c.23.5.8 127202 1vheA 373 18.45 b.49.3.1,c.56.5.4 100669,100670 1i1nA 226 20.31 c.66.1.7 71102 1noxA 205 21.21 d.90.1.1 40242 1f6yA 262 21.42 c.1.21.2 29673 2hqbA 296 21.43 1h4vB 421 23.55 c.51.1.1,d.104.1.1 60624,60625 1rypG 244 24.19 d.153.1.4 41938 1f0iA 504 25.23 d.136.1.2,d.136.1.2 59566,59567 1cfr 285 26.53 1lci 550 27.95 2dxqA 150 28.48 1wekA 217 29.25 c.129.1.1 114553 1k4mA 213 29.53 c.26.1.3 77258 2ioyA 283 29.98 1x89A 178 30.42 b.60.1.1 121799 2a4nA 182 31.27 d.108.1.1 126159 1xyzA 347 31.84 c.1.8.3 28804 1fnnA 389 32.24 a.4.5.11,c.37.1.20 16129,32426 2jhnA 295 32.38 1yumA 242 32.80 1vgwA 231 33.33 c.68.1.13 100612 1rlhA 173 33.73 d.256.1.1 97646 1zsxA 347 34.79 1qsmA 152 35.13 d.108.1.1 40808 1v71A 323 35.17 c.79.1.1 119859 5nul 138 35.22 1rypL 212 35.35 d.153.1.4 41880 2nx2A 181 36.04 1vpt 348 36.10 2o2gA 223 36.36 1sekA 378 36.45 e.1.1.1 42675 1fh9A 312 36.69 c.1.8.3 28913 1rhcA 330 37.84 c.1.16.3 97468 2h8eA 120 38.01 1rypC 244 38.31 d.153.1.4 41934 1qy5A 269 38.35 d.122.1.1 96573 1t5hX 504 38.44 e.23.1.1 106449 1xmxA 385 38.57 c.52.1.26 115568 3cpxA 321 38.71 2fvgA 340 38.83 b.49.3.1,c.56.5.4 134201,134202 2driA 271 40.25 c.93.1.1 35637 1evlA 401 40.60 c.51.1.1,d.104.1.1 33202,40751 1zr5A 214 41.40 c.50.1.2 125525 7a3hA 303 41.83 c.1.8.3 28817 2q4vA 170 45.51 d.108.1.1 139878 1oftA 161 45.54 c.37.1.22 86968 1opr 213 45.82 3pte 349 45.92 3c7bA 417 46.80 1yh3A 256 47.04 2ywiA 196 47.69 1gtzA 156 48.32 c.23.13.1 70539 1yd9A 193 48.54 c.50.1.2 122976 3buxB 329 48.77 1m0wA 491 49.03 c.30.1.4,d.142.1.6 78363,78364 2dxnA 274 49.85 1sdeA 347 50.56 e.3.1.1 112073 1yqsA 349 50.69 e.3.1.1 123899 2afcA 168 51.61 c.50.1.2 126676 2dx6A 159 51.92 2iwaA 266 54.41 1jftA 340 55.02 a.35.1.5,c.93.1.1 66652,66653 2d16A 162 55.13 2qk1A 249 55.70 2gzxA 265 55.75 2fepA 289 56.03 2hc1A 291 56.11 1amuA 563 56.16 e.23.1.1 43351 2zogA 479 56.29 1wrbA 253 57.59 c.37.1.19 121192 1o6gA 710 57.76 b.69.7.1,c.69.1.4 81087,81088 2fqxA 318 58.50 1fa0A 537 60.64 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1tlfA 301 60.83 c.93.1.1 35687 2nxfA 322 61.40 1lucA 355 61.97 c.1.16.1 29547 1ujpA 271 62.27 c.1.2.4 99462 1q0uA 219 62.54 c.37.1.19 95512 1fnc 314 62.71 2cxyA 125 64.29 2i6jA 161 64.97 1tcvA 287 65.50 1tv8A 340 66.28 c.1.28.3 107352 1rypF 233 67.23 d.153.1.4 41937 1yvoA 172 67.77 d.108.1.1 124106 2dp9A 124 68.81 b.122.1.5 131609 2vdxA 373 69.60 1d0iA 156 69.92 c.23.13.1 31383 1g0uD 241 70.64 d.153.1.4 41949 2fe7A 166 70.66 d.108.1.1 133325 3daaA 277 71.17 e.17.1.1 43272 1qunB 279 71.29 b.2.3.2,b.2.3.2 22411,22412 1j8yF 297 71.66 a.24.13.1,c.37.1.10 62747,62748 1v0lA 313 71.90 c.1.8.3 108207 2a5lA 200 72.34 c.23.5.8 126176 2qdxA 257 72.45 2ou3A 161 72.84 1l0wA 580 72.93 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 5nulA 138 73.20 c.23.5.1 31191 1byqA 228 73.31 d.122.1.1 41100 1qtwA 285 73.41 c.1.15.1 29392 1qopA 268 75.52 c.1.2.4 28570 3c7bB 366 76.13 2ar9A 278 76.59 1ug0A 88 76.59 a.217.1.1 107822 1st9A 143 76.65 c.47.1.10 98987 1rypA 243 77.29 d.153.1.4 41932 2bvcA 486 77.37 d.15.9.1,d.128.1.1 129243,129244 2ge3A 170 77.81 d.108.1.1 135044 2q9oA 559 78.16 2shpA 525 79.28 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2i66A 262 79.72 1ekeA 230 80.28 c.55.3.1 33572 2hq4A 161 80.72 1f75A 249 81.28 c.101.1.1 59662 1vgjA 184 81.89 1vrmA 325 81.91 d.96.2.1 120472 1i58A 189 82.40 d.122.1.3 61773 1ef1A 294 82.92 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1wchA 315 84.67 c.45.1.2 114508 1dorA 311 84.74 c.1.4.1 28595 1pswA 348 85.21 c.87.1.7 88287 2pt7A 330 85.69 2rfgA 297 87.23 2h4tA 626 89.28 2db3A 434 89.38 1io2A 213 89.65 c.55.3.1 62612 1pwgA 349 89.91 e.3.1.1 104340