# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.14e-120 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.43e-77 c.55.3.10 120785 1r4kA 169 1.42e-24 b.34.14.1 96997 1si2A 149 1.30e-18 b.34.14.1 105569 2qh9A 184 0.00997 1jx6A 342 0.01338 c.93.1.1 67406 1lylA 504 0.3766 b.40.4.1,d.104.1.1 25261,40717 1gudA 288 0.4071 c.93.1.1 83326 1qgoA 264 0.4541 c.92.1.2 35596 1e1oA 504 1.788 b.40.4.1,d.104.1.1 25258,40714 2bm8A 236 2.195 c.66.1.50 128771 1mkzA 172 2.497 c.57.1.1 84998 8abp 306 2.929 2dri 271 3.641 1kfcA 268 5.256 c.1.2.4 77371 1vm8A 534 5.432 c.68.1.5 113670 2fg1A 158 5.922 c.50.1.2 133400 1zrhA 274 6.375 1f52A 468 7.475 d.15.9.1,d.128.1.1 37839,41169 1adjA 421 9.065 c.51.1.1,d.104.1.1 33188,40737 1tjyA 316 9.240 c.93.1.1 107062 1zsxA 347 9.645 2fdxA 138 9.742 c.23.5.1 31192 2arkA 188 10.02 c.23.5.8 127202 2jhnA 295 11.30 2ch4A 320 11.47 b.40.7.1,d.122.1.3 130447,130448 1xzoA 174 11.62 c.47.1.10 122474 8abpA 306 11.98 c.93.1.1 35647 1rhcA 330 13.58 c.1.16.3 97468 1f6yA 262 14.77 c.1.21.2 29673 1x89A 178 15.57 b.60.1.1 121799 1q77A 138 15.67 c.26.2.4 96023 1i1nA 226 16.01 c.66.1.7 71102 1lucA 355 16.37 c.1.16.1 29547 2hqbA 296 17.68 1wekA 217 17.68 c.129.1.1 114553 1mdbA 539 18.00 e.23.1.1 79008 1wrbA 253 18.55 c.37.1.19 121192 1v71A 323 18.88 c.79.1.1 119859 1dbqA 289 19.61 c.93.1.1 35666 1evlA 401 20.08 c.51.1.1,d.104.1.1 33202,40751 2gzxA 265 21.30 1h4vB 421 22.80 c.51.1.1,d.104.1.1 60624,60625 1k4mA 213 23.65 c.26.1.3 77258 1xyzA 347 24.28 c.1.8.3 28804 1zr5A 214 24.86 c.50.1.2 125525 5nul 138 26.77 1vgwA 231 27.34 c.68.1.13 100612 1fh9A 312 27.51 c.1.8.3 28913 2qk1A 249 27.58 1rypE 242 29.37 d.153.1.4 41936 2ohhA 404 30.78 2nx2A 181 31.17 2dxnA 274 31.40 1qsmA 152 31.85 d.108.1.1 40808 2bvcA 486 32.02 d.15.9.1,d.128.1.1 129243,129244 1yd9A 193 32.05 c.50.1.2 122976 3c7bA 417 32.57 2hc1A 291 32.61 1ig8A 486 32.70 c.55.1.3,c.55.1.3 64746,64747 2afcA 168 33.54 c.50.1.2 126676 1vpt 348 33.95 1rypC 244 33.97 d.153.1.4 41934 2hq4A 161 34.35 2qv7A 337 34.94 1oftA 161 35.12 c.37.1.22 86968 2nxfA 322 35.40 2iwaA 266 37.01 1noxA 205 37.22 d.90.1.1 40242 1f0iA 504 37.51 d.136.1.2,d.136.1.2 59566,59567 1qtwA 285 38.01 c.1.15.1 29392 1l0wA 580 38.09 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1rypL 212 38.44 d.153.1.4 41880 1dorA 311 38.50 c.1.4.1 28595 1fa0A 537 39.64 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1yh3A 256 39.72 3c7bB 366 40.44 2qy9A 309 41.82 1yumA 242 42.52 2db3A 434 42.54 2dx6A 159 42.67 1nj4A 363 42.68 b.105.1.1,e.3.1.1 80545,80546 1usgA 346 43.31 c.93.1.1 99864 1fnc 314 43.86 5nulA 138 44.36 c.23.5.1 31191 1qunB 279 44.46 b.2.3.2,b.2.3.2 22411,22412 1ujpA 271 44.99 c.1.2.4 99462 1vheA 373 45.96 b.49.3.1,c.56.5.4 100669,100670 1q0uA 219 47.02 c.37.1.19 95512 2q4vA 170 48.56 d.108.1.1 139878 1fnnA 389 48.64 a.4.5.11,c.37.1.20 16129,32426 2zogA 479 48.93 1opr 213 49.28 1j8yF 297 50.18 a.24.13.1,c.37.1.10 62747,62748 1ekeA 230 50.37 c.55.3.1 33572 2shpA 525 50.58 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2fvgA 340 50.59 b.49.3.1,c.56.5.4 134201,134202 2i66A 262 50.71 1v0lA 313 50.74 c.1.8.3 108207 1rypA 243 50.77 d.153.1.4 41932 1gtzA 156 51.02 c.23.13.1 70539 1jubA 311 51.51 c.1.4.1 90908 1rhyA 202 51.73 d.14.1.9,d.14.1.9 97491,97492 1o6gA 710 51.89 b.69.7.1,c.69.1.4 81087,81088 1jb9A 316 53.24 b.43.4.2,c.25.1.1 62840,62841 1lci 550 54.08 2b81A 323 54.47 2rfgA 297 54.58 1tlfA 301 54.91 c.93.1.1 35687 1amuA 563 54.96 e.23.1.1 43351 1st9A 143 55.35 c.47.1.10 98987 1xmxA 385 57.20 c.52.1.26 115568 2h8eA 120 57.22 1u0tA 307 57.82 e.52.1.1 107567 2dxqA 150 58.10 1eg9A 449 58.26 b.33.1.2,d.129.3.3 24443,41322 1u4nA 310 58.60 c.69.1.2 113021 1jftA 340 58.62 a.35.1.5,c.93.1.1 66652,66653 1t5hX 504 58.77 e.23.1.1 106449 2ioyA 283 58.91 2i6jA 161 59.00 1tcvA 287 59.20 2q8uA 336 59.50 2a5lA 200 60.95 c.23.5.8 126176 2dp9A 124 61.41 b.122.1.5 131609 2ou3A 161 61.83 2uuuA 584 62.65 2pt7A 330 65.47 1ezwA 349 66.18 c.1.16.3 29558 1lzlA 323 66.45 c.69.1.2 78306 1ef1A 294 66.49 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1c4zA 358 66.61 d.148.1.1 41766 2ywiA 196 67.00 2bkrA 212 67.52 d.3.1.7 128710 1j5wA 298 67.89 d.104.1.1 71589 1rypG 244 69.96 d.153.1.4 41938 2q9oA 559 71.52 2i75A 320 72.12 1yb0A 159 72.35 d.118.1.1 122865 1qopB 396 72.49 c.79.1.1 35270 2fqxA 318 73.44 2o2gA 223 73.79 1iauA 227 73.92 b.47.1.2 62124 2cxyA 125 74.20 1ydgA 211 74.26 c.23.5.8 116614 1d0iA 156 74.44 c.23.13.1 31383 2driA 271 74.50 c.93.1.1 35637 2j01Q 141 75.06 1io2A 213 75.07 c.55.3.1 62612 1f75A 249 75.58 c.101.1.1 59662 7a3hA 303 76.63 c.1.8.3 28817 2v5xA 388 76.99 2pjdA 343 78.67 2fepA 289 79.20 1iyeA 309 79.21 e.17.1.1 83786 2o3sA 262 80.38 2g4rA 160 81.52 2prrA 197 82.11 1qopA 268 82.74 c.1.2.4 28570 1r0vA 305 82.74 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 3berA 249 83.20 1sviA 195 83.52 c.37.1.8 106048 1rzuA 485 83.63 c.87.1.8 105140 1cfr 285 83.67 2bijA 305 84.53 1fp2A 352 86.00 a.4.5.29,c.66.1.12 59941,59942 1jyoA 130 86.82 d.198.1.1 67483 2ge3A 170 87.29 d.108.1.1 135044 2ar9A 278 88.49 1yvoA 172 88.91 d.108.1.1 124106