# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 6.37e-117 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 4.39e-75 c.55.3.10 120785 1r4kA 169 5.73e-24 b.34.14.1 96997 1si2A 149 5.38e-18 b.34.14.1 105569 2qh9A 184 0.01592 1jx6A 342 0.01700 c.93.1.1 67406 1lylA 504 0.5924 b.40.4.1,d.104.1.1 25261,40717 1qgoA 264 0.8131 c.92.1.2 35596 1gudA 288 1.073 c.93.1.1 83326 2bm8A 236 2.003 c.66.1.50 128771 1e1oA 504 2.444 b.40.4.1,d.104.1.1 25258,40714 1mkzA 172 2.875 c.57.1.1 84998 8abp 306 4.292 1vm8A 534 4.979 c.68.1.5 113670 2dri 271 7.093 1zrhA 274 7.102 2ch4A 320 7.115 b.40.7.1,d.122.1.3 130447,130448 1kfcA 268 7.919 c.1.2.4 77371 1f52A 468 9.866 d.15.9.1,d.128.1.1 37839,41169 1xzoA 174 9.886 c.47.1.10 122474 1wrbA 253 10.82 c.37.1.19 121192 2fg1A 158 11.34 c.50.1.2 133400 2fdxA 138 14.10 c.23.5.1 31192 2jhnA 295 14.17 3c7bA 417 15.18 1zsxA 347 15.47 1f6yA 262 15.99 c.1.21.2 29673 2arkA 188 17.23 c.23.5.8 127202 1vheA 373 17.33 b.49.3.1,c.56.5.4 100669,100670 1q77A 138 17.68 c.26.2.4 96023 1adjA 421 17.99 c.51.1.1,d.104.1.1 33188,40737 8abpA 306 18.97 c.93.1.1 35647 1i1nA 226 19.63 c.66.1.7 71102 2qk1A 249 20.38 1vgwA 231 23.68 c.68.1.13 100612 5nul 138 24.51 1k4mA 213 26.35 c.26.1.3 77258 2hqbA 296 26.39 1gtzA 156 26.65 c.23.13.1 70539 1zr5A 214 26.89 c.50.1.2 125525 1rypE 242 28.08 d.153.1.4 41936 2qv7A 337 28.15 1opr 213 28.63 1v71A 323 28.77 c.79.1.1 119859 2hq4A 161 30.71 3c7bB 366 32.29 1rypL 212 32.34 d.153.1.4 41880 1q0uA 219 32.93 c.37.1.19 95512 1x89A 178 33.07 b.60.1.1 121799 1mdbA 539 33.51 e.23.1.1 79008 1tjyA 316 33.81 c.93.1.1 107062 2afcA 168 34.88 c.50.1.2 126676 1eg9A 449 35.32 b.33.1.2,d.129.3.3 24443,41322 1wekA 217 35.52 c.129.1.1 114553 2db3A 434 35.80 2dxqA 150 36.98 2hc1A 291 37.07 1lucA 355 37.48 c.1.16.1 29547 1yd9A 193 37.72 c.50.1.2 122976 2zogA 479 38.08 1dbqA 289 38.12 c.93.1.1 35666 2gzxA 265 38.47 1xyzA 347 39.05 c.1.8.3 28804 1rhcA 330 39.10 c.1.16.3 97468 2fqxA 318 40.30 2dxnA 274 41.04 2nxfA 322 41.09 1l0wA 580 41.81 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1rypC 244 42.03 d.153.1.4 41934 1qsmA 152 43.20 d.108.1.1 40808 1d0iA 156 44.52 c.23.13.1 31383 1yumA 242 45.42 1oftA 161 45.53 c.37.1.22 86968 1fh9A 312 45.84 c.1.8.3 28913 1cfr 285 47.33 2dx6A 159 47.63 1evlA 401 48.82 c.51.1.1,d.104.1.1 33202,40751 1h4vB 421 50.07 c.51.1.1,d.104.1.1 60624,60625 2iwaA 266 50.40 2nx2A 181 50.63 1noxA 205 51.17 d.90.1.1 40242 1vpt 348 51.75 1tv8A 340 52.16 c.1.28.3 107352 1dorA 311 52.48 c.1.4.1 28595 2a5lA 200 52.48 c.23.5.8 126176 1io2A 213 52.85 c.55.3.1 62612 2o2gA 223 54.23 2b1kA 168 54.63 2bvcA 486 55.20 d.15.9.1,d.128.1.1 129243,129244 1ig8A 486 55.73 c.55.1.3,c.55.1.3 64746,64747 2ywiA 196 55.73 2i6jA 161 55.79 2q4vA 170 56.47 d.108.1.1 139878 1yh3A 256 56.77 1fnnA 389 56.87 a.4.5.11,c.37.1.20 16129,32426 2fvgA 340 57.60 b.49.3.1,c.56.5.4 134201,134202 1vgjA 184 58.08 2pt7A 330 58.21 1lci 550 58.30 1st9A 143 58.97 c.47.1.10 98987 1f0iA 504 59.24 d.136.1.2,d.136.1.2 59566,59567 3by3A 301 60.01 2h8eA 120 60.16 2ohhA 404 60.52 1o6gA 710 60.55 b.69.7.1,c.69.1.4 81087,81088 2i75A 320 60.94 1xmxA 385 62.26 c.52.1.26 115568 3berA 249 62.94 2qy9A 309 63.44 2q8uA 336 63.63 2ioyA 283 63.94 1ekeA 230 65.32 c.55.3.1 33572 1a4mA 349 65.46 c.1.9.1 29014 1j5wA 298 65.62 d.104.1.1 71589 2uuuA 584 65.72 2bijA 305 65.81 2vupA 190 66.68 1f75A 249 66.95 c.101.1.1 59662 1ujpA 271 68.28 c.1.2.4 99462 1v0lA 313 68.56 c.1.8.3 108207 1ydgA 211 68.79 c.23.5.8 116614 1r26A 125 69.17 c.47.1.1 96847 2shpA 525 70.22 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1u0tA 307 70.51 e.52.1.1 107567 2rfgA 297 70.91 2a4nA 182 72.01 d.108.1.1 126159 1jubA 311 72.28 c.1.4.1 90908 2d0bA 310 72.40 1fa0A 537 72.61 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1rhyA 202 73.22 d.14.1.9,d.14.1.9 97491,97492 1tcvA 287 73.80 2hjhA 354 75.20 1cozA 129 75.64 c.26.1.2 31598 3pte 349 75.92 1rypG 244 76.44 d.153.1.4 41938 1lzlA 323 76.73 c.69.1.2 78306 2qdxA 257 77.10 3buxB 329 77.77 5nulA 138 77.99 c.23.5.1 31191 2pjdA 343 78.83 1j8yF 297 78.85 a.24.13.1,c.37.1.10 62747,62748 2q9oA 559 78.86 7a3hA 303 79.07 c.1.8.3 28817 1ef1A 294 79.54 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2driA 271 79.82 c.93.1.1 35637 1ug0A 88 84.09 a.217.1.1 107822 1fnc 314 84.74 2i66A 262 84.95 1qtwA 285 85.00 c.1.15.1 29392 1jftA 340 86.07 a.35.1.5,c.93.1.1 66652,66653 1t5hX 504 86.40 e.23.1.1 106449 2fepA 289 88.13 1u4nA 310 88.77 c.69.1.2 113021 2qwvA 208 88.83 1uozA 315 89.09 c.6.1.1 113354 1iyeA 309 89.12 e.17.1.1 83786