# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.67e-70 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.63e-48 c.55.3.10 120785 1r4kA 169 2.39e-16 b.34.14.1 96997 1si2A 149 8.62e-13 b.34.14.1 105569 1jx6A 342 0.03397 c.93.1.1 67406 1gudA 288 0.07321 c.93.1.1 83326 1gca 309 0.1554 2qh9A 184 0.6772 1tjyA 316 0.9268 c.93.1.1 107062 1gtzA 156 1.021 c.23.13.1 70539 1d0iA 156 1.153 c.23.13.1 31383 2dri 271 1.497 8abp 306 1.636 2fvyA 309 1.978 c.93.1.1 134227 1fa0A 537 2.611 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 2dxnA 274 3.391 2qwxA 231 3.435 1lylA 504 3.779 b.40.4.1,d.104.1.1 25261,40717 1h05A 146 4.130 c.23.13.1 76433 2ch4A 320 4.638 b.40.7.1,d.122.1.3 130447,130448 1dbqA 289 6.854 c.93.1.1 35666 2ioyA 283 8.147 2dhqA 146 8.368 c.23.13.1 31382 2ar9A 278 8.694 1kz7A 353 9.263 a.87.1.1,b.55.1.1 73333,73334 1uqrA 154 9.292 c.23.13.1 99779 1bykA 255 10.37 c.93.1.1 35706 1rypC 244 13.18 d.153.1.4 41934 2g0dA 409 13.32 1e1oA 504 13.50 b.40.4.1,d.104.1.1 25258,40714 1mkzA 172 13.73 c.57.1.1 84998 2fn9A 290 14.00 2qh8A 302 14.71 8abpA 306 14.95 c.93.1.1 35647 1qsoA 149 15.27 d.108.1.1 40812 1vh0A 161 15.90 c.116.1.3 100626 1f6yA 262 16.08 c.1.21.2 29673 1yx1A 264 17.29 c.1.15.7 124169 2c4wA 176 17.40 2driA 271 17.60 c.93.1.1 35637 3daaA 277 18.08 e.17.1.1 43272 1yqsA 349 20.81 e.3.1.1 123899 1yb0A 159 22.74 d.118.1.1 122865 1xmpA 170 23.75 c.23.8.1 115521 1nmsA 249 24.07 c.17.1.1 85879 1tlfA 301 24.25 c.93.1.1 35687 1rhcA 330 25.72 c.1.16.3 97468 1v95A 130 27.53 c.51.1.1 108435 1usgA 346 28.21 c.93.1.1 99864 2ffyA 358 30.83 e.3.1.1 133394 3pte 349 31.75 1sdeA 347 32.74 e.3.1.1 112073 1qgoA 264 32.90 c.92.1.2 35596 2qu7A 288 33.65 1ci9A 392 33.96 e.3.1.1 64767 2g4rA 160 34.46 1rypG 244 35.92 d.153.1.4 41938 2qvcA 313 36.21 3crjA 199 36.59 1hqkA 154 37.02 c.16.1.1 65902 1vrmA 325 38.51 d.96.2.1 120472 1qsmA 152 39.27 d.108.1.1 40808 1yarA 233 39.60 d.153.1.4 122837 2arrA 382 40.25 2g2cA 167 41.37 c.57.1.1 134535 1bkrA 109 41.52 a.40.1.1 17394 1et0A 269 43.46 e.17.1.1 43289 1pjaA 302 43.60 c.69.1.13 94758 1pwgA 349 43.65 e.3.1.1 104340 2nxfA 322 45.85 1jv1A 505 45.96 c.68.1.5 71892 2qv7A 337 46.56 1u11A 182 48.13 c.23.8.1 107576 1rypA 243 50.38 d.153.1.4 41932 3cxjA 165 50.50 1rgyA 360 50.85 e.3.1.1 97456 2j4xA 213 51.10 1o4vA 183 51.25 c.23.8.1 86628 1f8yA 157 51.42 c.23.14.1 31395 1ki1B 352 52.30 a.87.1.1,b.55.1.1 72497,72498 2obiA 183 52.52 1vm8A 534 52.81 c.68.1.5 113670 1lu4A 136 53.19 c.47.1.10 91124 1rvv1 154 53.28 2v1xA 591 53.41 1jftA 340 53.66 a.35.1.5,c.93.1.1 66652,66653 1cfr 285 53.75 2i0fA 157 54.81 1zxuA 217 55.17 d.23.1.2 125796 2fepA 289 57.64 1phnB 172 58.48 a.1.1.3 15642 2prrA 197 58.58 2liv 344 59.41 2iutA 574 59.46 1l0gA 358 59.65 e.3.1.1 73400 2hqbA 296 60.57 1j8yF 297 61.59 a.24.13.1,c.37.1.10 62747,62748 1m0wA 491 61.86 c.30.1.4,d.142.1.6 78363,78364 1st9A 143 63.16 c.47.1.10 98987 1t17A 148 66.13 d.129.3.6 112215 2afcA 168 66.19 c.50.1.2 126676 1vgjA 184 66.76 1wrvA 308 66.92 1i5gA 144 67.27 c.47.1.10 61784 2oerA 214 67.85 1nw1A 429 68.37 d.144.1.8 86286 2fuqA 747 69.49 2fg1A 158 69.67 c.50.1.2 133400 1t5oA 351 71.92 c.124.1.5 106459 1fsyA 358 71.95 e.3.1.1 60016 1t56A 216 72.76 a.4.1.9,a.121.1.1 106428,106429 3by5A 155 73.42 2z98A 200 73.57 1sh5A 245 73.72 a.40.1.1,a.40.1.1 105543,105544 1oftA 161 74.65 c.37.1.22 86968 2oyoA 196 78.17 1y81A 138 78.30 c.2.1.8 122731 1sg0A 230 78.49 c.23.5.3 118955 1rgzA 363 78.92 e.3.1.1 97457 1pbvA 195 79.79 a.118.3.1 19179 1rypD 241 80.29 d.153.1.4 41935 3c6qA 311 80.33 1xmxA 385 80.51 c.52.1.26 115568 1i2kA 269 81.11 e.17.1.1 90661 2csgA 424 81.35 b.82.2.12 130768 1nfp 228 81.64 1a0gA 282 81.90 e.17.1.1 43276 1zxxA 319 82.38 1cvrA 435 84.06 b.1.18.12,c.17.1.2 21949,31006 3chy 128 85.27 1f4pA 147 85.47 c.23.5.1 59651 2uuuA 584 86.49 2v95A 371 86.57 1z15A 344 87.80 2rgyA 290 87.88 2pt7A 330 89.43 1s3zA 165 89.49 d.108.1.1 105250