# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.67e-118 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.65e-76 c.55.3.10 120785 1r4kA 169 7.11e-25 b.34.14.1 96997 1si2A 149 2.80e-18 b.34.14.1 105569 2qh9A 184 0.01340 1jx6A 342 0.03976 c.93.1.1 67406 2ch4A 320 0.8446 b.40.7.1,d.122.1.3 130447,130448 1mkzA 172 0.9449 c.57.1.1 84998 1lylA 504 1.077 b.40.4.1,d.104.1.1 25261,40717 1vm8A 534 4.297 c.68.1.5 113670 2bm8A 236 4.624 c.66.1.50 128771 1mdbA 539 7.663 e.23.1.1 79008 1gudA 288 7.917 c.93.1.1 83326 1qgoA 264 8.861 c.92.1.2 35596 1qsmA 152 9.726 d.108.1.1 40808 1e1oA 504 9.758 b.40.4.1,d.104.1.1 25258,40714 2qv7A 337 9.792 3d3aA 612 9.98 1f0iA 504 10.49 d.136.1.2,d.136.1.2 59566,59567 2fdxA 138 10.86 c.23.5.1 31192 1u0tA 307 10.90 e.52.1.1 107567 1l0wA 580 11.04 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 3pte 349 13.02 1sekA 378 13.60 e.1.1.1 42675 1k4mA 213 13.97 c.26.1.3 77258 2a4nA 182 14.18 d.108.1.1 126159 1f6yA 262 14.20 c.1.21.2 29673 2ywiA 196 15.06 1adjA 421 15.57 c.51.1.1,d.104.1.1 33188,40737 1qsoA 149 16.07 d.108.1.1 40812 1fh9A 312 16.11 c.1.8.3 28913 1kfcA 268 16.81 c.1.2.4 77371 2dxqA 150 17.14 1m0wA 491 18.06 c.30.1.4,d.142.1.6 78363,78364 1tjyA 316 18.38 c.93.1.1 107062 2fg1A 158 19.41 c.50.1.2 133400 1q77A 138 20.33 c.26.2.4 96023 3by5A 155 22.44 1rypC 244 22.83 d.153.1.4 41934 1xyzA 347 23.37 c.1.8.3 28804 1yvoA 172 23.45 d.108.1.1 124106 2d5rA 252 23.93 1cozA 129 24.18 c.26.1.2 31598 2dxnA 274 24.46 1yqsA 349 24.72 e.3.1.1 123899 1zsxA 347 25.58 1vheA 373 26.99 b.49.3.1,c.56.5.4 100669,100670 1sdeA 347 27.23 e.3.1.1 112073 1zxxA 319 28.55 2h8eA 120 28.59 1evlA 401 28.99 c.51.1.1,d.104.1.1 33202,40751 1lci 550 30.55 2hqbA 296 32.20 5nul 138 32.89 2arkA 188 33.17 c.23.5.8 127202 1h4vB 421 34.23 c.51.1.1,d.104.1.1 60624,60625 1xhbA 472 35.20 b.42.2.1,c.68.1.17 115290,115291 2q4vA 170 35.71 d.108.1.1 139878 1t5hX 504 36.12 e.23.1.1 106449 1yr0A 175 36.48 d.108.1.1 123905 2vdxA 373 36.50 2ga9A 297 37.49 c.66.1.25 134885 1xmxA 385 38.28 c.52.1.26 115568 1rlhA 173 38.57 d.256.1.1 97646 1i1nA 226 39.45 c.66.1.7 71102 1yumA 242 39.51 1pwgA 349 39.58 e.3.1.1 104340 2i6jA 161 40.47 3daaA 277 42.25 e.17.1.1 43272 2yvqA 143 42.40 1d0iA 156 42.89 c.23.13.1 31383 1rypA 243 43.53 d.153.1.4 41932 1wekA 217 44.13 c.129.1.1 114553 1st9A 143 44.24 c.47.1.10 98987 1et0A 269 45.04 e.17.1.1 43289 2nxfA 322 45.07 1fnnA 389 45.50 a.4.5.11,c.37.1.20 16129,32426 2q9oA 559 45.91 2vupA 190 46.32 2afcA 168 46.66 c.50.1.2 126676 1nj4A 363 46.96 b.105.1.1,e.3.1.1 80545,80546 2uuuA 584 47.05 1xzoA 174 47.35 c.47.1.10 122474 1v71A 323 47.53 c.79.1.1 119859 1f75A 249 48.02 c.101.1.1 59662 1ug0A 88 48.04 a.217.1.1 107822 5nulA 138 48.24 c.23.5.1 31191 1vpt 348 48.58 2ge3A 170 50.37 d.108.1.1 135044 1y81A 138 50.45 c.2.1.8 122731 1v10A 521 50.92 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1f52A 468 51.95 d.15.9.1,d.128.1.1 37839,41169 1f8yA 157 52.87 c.23.14.1 31395 1rypF 233 52.87 d.153.1.4 41937 1s7kA 182 52.99 d.108.1.1 118878 1i2kA 269 53.14 e.17.1.1 90661 1c4zA 358 53.79 d.148.1.1 41766 1gz0A 253 54.19 c.116.1.1,d.79.3.3 76391,76392 1vptA 348 54.62 c.66.1.25 34207 1gtzA 156 54.91 c.23.13.1 70539 1bkrA 109 56.06 a.40.1.1 17394 1nktA 922 56.60 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1qtwA 285 57.94 c.1.15.1 29392 1o9gA 250 58.31 c.66.1.29 86692 1jv1A 505 58.83 c.68.1.5 71892 1w9yA 319 59.38 b.82.2.1 120801 1i58A 189 59.45 d.122.1.3 61773 2dri 271 59.56 2qdxA 257 60.86 1q8rA 120 62.41 d.79.6.1 96225 1yxaA 398 63.12 8abp 306 63.79 2b1kA 168 64.03 2ajtA 500 64.20 b.43.2.2,c.85.1.2 126894,126895 1ojqA 212 64.31 d.166.1.1 93146 2d1zA 436 65.24 1v0wA 506 66.60 d.136.1.2,d.136.1.2 108220,108221 2a2jA 246 67.89 b.45.1.1 126033 2dt8A 280 68.08 1wrvA 308 68.41 1vhsA 175 68.65 d.108.1.1 100698 1olmA 403 68.67 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1s3zA 165 71.53 d.108.1.1 105250 2cvbA 188 71.70 c.47.1.10 130859 2tysA 268 72.82 c.1.2.4 28572 2obiA 183 72.92 2g4rA 160 73.71 2bvcA 486 73.98 d.15.9.1,d.128.1.1 129243,129244 1vrmA 325 74.82 d.96.2.1 120472 2fqxA 318 75.00 1rypL 212 75.15 d.153.1.4 41880 2d9bA 109 75.96 2p7jA 287 76.05 2fe7A 166 78.16 d.108.1.1 133325 2o2gA 223 78.45 3buxB 329 79.44 1g0uC 243 79.57 d.153.1.4 41948 1r0vA 305 80.31 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1exbA 332 80.57 c.1.7.1 28666 1amuA 563 81.26 e.23.1.1 43351 2b5gA 171 82.25 d.108.1.1 127892 1hdoA 206 83.27 c.2.1.2 60965 2iwaA 266 84.61 1i5gA 144 84.87 c.47.1.10 61784 2dx6A 159 87.57 2arrA 382 87.86 1hqkA 154 87.86 c.16.1.1 65902 1qhiA 366 88.53 c.37.1.1 31860 2p4gA 270 88.95