# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.13e-46 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.31e-31 c.55.3.10 120785 1r4kA 169 1.70e-10 b.34.14.1 96997 1si2A 149 9.01e-08 b.34.14.1 105569 1jx6A 342 0.7204 c.93.1.1 67406 2qh9A 184 0.9890 1lylA 504 2.227 b.40.4.1,d.104.1.1 25261,40717 2hu5A 582 3.431 b.69.7.2,c.69.1.33 136763,136764 1adjA 421 5.971 c.51.1.1,d.104.1.1 33188,40737 1qopB 396 7.974 c.79.1.1 35270 2napA 723 8.006 b.52.2.2,c.81.1.1 26926,35334 3crvA 551 8.335 2v3vA 723 9.929 2c0hA 353 10.94 c.1.8.3 129594 2bvcA 486 11.38 d.15.9.1,d.128.1.1 129243,129244 1reqB 637 12.67 c.1.19.1,c.23.6.1 29621,31248 1zlqA 502 12.75 c.94.1.1 125253 2uuuA 584 14.00 1xocA 520 14.06 c.94.1.1 122201 1e8yA 966 15.39 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1zsxA 347 19.29 2shpA 525 21.04 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2v3gA 283 21.97 1vr5A 547 22.22 c.94.1.1 120437 1k3iA 656 22.51 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2ptzA 432 23.72 2gtqA 867 25.32 1f6yA 262 26.97 c.1.21.2 29673 2z7xB 520 28.27 1rzuA 485 29.16 c.87.1.8 105140 2c1xA 456 29.18 1u3dA 509 29.25 a.99.1.1,c.28.1.1 107638,107639 1mkzA 172 29.92 c.57.1.1 84998 2ieaA 886 30.07 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1iyxA 432 33.61 c.1.11.1,d.54.1.1 83815,83816 2grvA 621 33.97 1vheA 373 34.99 b.49.3.1,c.56.5.4 100669,100670 1qwnA 1045 37.61 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1bf2 750 37.94 2cfuA 658 38.72 2iucA 375 39.12 2oqhA 385 39.68 2bbkH 355 40.78 b.69.2.1 27634 2vggA 528 41.58 2as0A 396 41.90 b.122.1.9,c.66.1.51 127227,127228 1ac5 483 43.49 1exbA 332 44.10 c.1.7.1 28666 1evlA 401 45.00 c.51.1.1,d.104.1.1 33202,40751 2yhx 457 45.28 1b65A 375 45.64 d.154.1.1 42020 2b78A 385 46.42 b.122.1.9,c.66.1.51 128025,128026 2nutB 753 47.96 1e7uA 961 50.79 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2yvdA 431 51.33 2h5uA 499 51.38 2dorA 311 51.58 c.1.4.1 28593 2p51A 333 53.06 1ecpA 238 53.11 c.56.2.1 33775 3b34A 891 53.62 1zu0A 529 54.63 1h4vB 421 54.63 c.51.1.1,d.104.1.1 60624,60625 2z3zA 706 57.51 1sxjA 511 58.42 a.80.1.1,c.37.1.20 106081,106082 2pmqA 377 59.70 1gkpA 458 60.87 b.92.1.3,c.1.9.6 70231,70232 1r9lA 309 60.92 c.94.1.1 97262 3b40A 417 61.68 1ylhA 560 62.18 2r8wA 332 62.76 1cs0A 1073 63.25 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1l8aA 886 65.27 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1d3gA 367 65.88 c.1.4.1 28600 1a3wA 500 66.11 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 5reqA 727 66.32 c.1.19.1,c.23.6.1 29632,31259 2j7nA 1022 67.40 1iicA 422 67.67 d.108.1.2,d.108.1.2 62422,62423 2debA 653 68.27 2ewfA 610 68.87 1dorA 311 69.29 c.1.4.1 28595 1o6gA 710 70.24 b.69.7.1,c.69.1.4 81087,81088 2im5A 394 71.31 1ufaA 520 71.44 a.8.3.3,c.6.2.4 99329,99330 2nr8A 358 71.86 2hldD 478 72.71 3cp8A 641 73.05 1qwgA 251 73.20 c.1.27.1 96473 2g50A 530 73.39 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1eyeA 280 75.47 c.1.21.1 29672 1lqaA 346 75.65 c.1.7.1 84674 2qxfA 482 75.71 2f2hA 773 75.91 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1j8fA 323 76.22 c.31.1.5 62738 1sflA 238 76.98 c.1.10.1 112077 2og2A 359 77.89 2bjbA 462 78.97 2ohhA 404 79.17 1uiuA 502 79.44 c.94.1.1 99434 2hjhA 354 79.79 1jakA 512 82.09 c.1.8.6,d.92.2.1 66472,66473 8abp 306 82.35 3c7bB 366 82.84 2hoeA 380 83.90 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1zjkA 403 84.81 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1vpt 348 84.93 3ch0A 272 85.13 2q09A 416 85.86 1yu0A 381 88.29 b.163.1.1,d.169.1.8 124025,124026 1pswA 348 89.52 c.87.1.7 88287