# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.46e-117 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.82e-76 c.55.3.10 120785 1r4kA 169 1.67e-24 b.34.14.1 96997 1si2A 149 2.14e-18 b.34.14.1 105569 2qh9A 184 0.01505 1jx6A 342 0.03539 c.93.1.1 67406 1lylA 504 0.3661 b.40.4.1,d.104.1.1 25261,40717 1mkzA 172 0.9653 c.57.1.1 84998 2bm8A 236 2.809 c.66.1.50 128771 1e1oA 504 4.200 b.40.4.1,d.104.1.1 25258,40714 1gudA 288 4.444 c.93.1.1 83326 2ch4A 320 4.695 b.40.7.1,d.122.1.3 130447,130448 1vm8A 534 5.072 c.68.1.5 113670 2nxfA 322 8.407 1kfcA 268 8.641 c.1.2.4 77371 1l0wA 580 9.179 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1f0iA 504 9.697 d.136.1.2,d.136.1.2 59566,59567 1d0iA 156 10.76 c.23.13.1 31383 1adjA 421 10.88 c.51.1.1,d.104.1.1 33188,40737 1mdbA 539 11.01 e.23.1.1 79008 1k4mA 213 11.37 c.26.1.3 77258 2dxnA 274 12.44 1f6yA 262 12.74 c.1.21.2 29673 2fdxA 138 13.20 c.23.5.1 31192 1gtzA 156 13.45 c.23.13.1 70539 1qgoA 264 14.03 c.92.1.2 35596 1tjyA 316 15.58 c.93.1.1 107062 1zsxA 347 15.60 1q77A 138 17.40 c.26.2.4 96023 2fg1A 158 17.92 c.50.1.2 133400 5nul 138 17.93 1cozA 129 18.63 c.26.1.2 31598 3pte 349 18.90 2hqbA 296 19.44 1qsmA 152 21.51 d.108.1.1 40808 2qv7A 337 22.45 1yumA 242 23.56 1f52A 468 24.66 d.15.9.1,d.128.1.1 37839,41169 1xzoA 174 24.70 c.47.1.10 122474 1lci 550 25.68 1evlA 401 25.72 c.51.1.1,d.104.1.1 33202,40751 1m0wA 491 25.89 c.30.1.4,d.142.1.6 78363,78364 1dorA 311 26.74 c.1.4.1 28595 3daaA 277 27.51 e.17.1.1 43272 2ywiA 196 27.79 1u0tA 307 28.17 e.52.1.1 107567 2dxqA 150 28.36 1v71A 323 28.92 c.79.1.1 119859 2fqxA 318 30.39 1qsoA 149 30.82 d.108.1.1 40812 1h4vB 421 31.16 c.51.1.1,d.104.1.1 60624,60625 2i6jA 161 31.92 1xyzA 347 32.16 c.1.8.3 28804 2arkA 188 32.97 c.23.5.8 127202 2h8eA 120 33.46 1yvoA 172 34.49 d.108.1.1 124106 2d5rA 252 34.91 1zxxA 319 35.48 1fh9A 312 35.64 c.1.8.3 28913 2tysA 268 35.80 c.1.2.4 28572 2a4nA 182 36.01 d.108.1.1 126159 2vupA 190 36.14 2bvcA 486 36.27 d.15.9.1,d.128.1.1 129243,129244 1st9A 143 36.36 c.47.1.10 98987 1i1nA 226 36.88 c.66.1.7 71102 2gzxA 265 38.20 2q9oA 559 39.39 1rypC 244 39.89 d.153.1.4 41934 1vheA 373 40.39 b.49.3.1,c.56.5.4 100669,100670 2hoeA 380 40.51 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2uuuA 584 40.74 1yqsA 349 41.93 e.3.1.1 123899 1qtwA 285 42.20 c.1.15.1 29392 3by5A 155 42.38 1xwyA 264 43.03 c.1.9.12 122411 1i2kA 269 43.41 e.17.1.1 90661 1xmxA 385 43.63 c.52.1.26 115568 3buxB 329 43.74 1et0A 269 44.05 e.17.1.1 43289 1nj4A 363 44.36 b.105.1.1,e.3.1.1 80545,80546 2q4vA 170 45.25 d.108.1.1 139878 1f8yA 157 45.34 c.23.14.1 31395 1sekA 378 45.82 e.1.1.1 42675 1jv1A 505 46.00 c.68.1.5 71892 3c7bB 366 46.02 1h05A 146 46.95 c.23.13.1 76433 1t5hX 504 47.78 e.23.1.1 106449 2dri 271 48.67 1ug0A 88 48.93 a.217.1.1 107822 3d3aA 612 49.53 3c7bA 417 49.86 1kb9B 352 50.55 d.185.1.1,d.185.1.1 77313,77314 1jyoA 130 51.29 d.198.1.1 67483 2g4rA 160 51.63 1f75A 249 51.78 c.101.1.1 59662 8abp 306 52.73 2hc1A 291 52.75 1ojqA 212 54.79 d.166.1.1 93146 1rypL 212 55.19 d.153.1.4 41880 2yvqA 143 55.49 1ujpA 271 55.91 c.1.2.4 99462 1vptA 348 55.98 c.66.1.25 34207 1y81A 138 57.06 c.2.1.8 122731 1yr0A 175 57.38 d.108.1.1 123905 2b1kA 168 58.18 1ef1A 294 58.58 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1rypF 233 60.07 d.153.1.4 41937 5nulA 138 60.37 c.23.5.1 31191 2f5tX 233 60.95 1hdoA 206 61.33 c.2.1.2 60965 2ga9A 297 62.77 c.66.1.25 134885 1s7kA 182 62.84 d.108.1.1 118878 1amuA 563 62.95 e.23.1.1 43351 2o2gA 223 63.04 1jubA 311 63.29 c.1.4.1 90908 1v10A 521 64.57 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1c4zA 358 65.19 d.148.1.1 41766 1fnnA 389 66.30 a.4.5.11,c.37.1.20 16129,32426 1xhbA 472 68.68 b.42.2.1,c.68.1.17 115290,115291 1rypA 243 68.86 d.153.1.4 41932 2g2cA 167 69.01 c.57.1.1 134535 2cvbA 188 69.10 c.47.1.10 130859 2pmbA 462 69.19 2j01Q 141 72.27 2afcA 168 72.37 c.50.1.2 126676 1r0vA 305 73.38 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1wrvA 308 73.98 1i58A 189 74.06 d.122.1.3 61773 2dhqA 146 74.15 c.23.13.1 31382 1opr 213 74.21 2vdxA 373 75.54 1vpt 348 77.12 1v0wA 506 77.78 d.136.1.2,d.136.1.2 108220,108221 2oikA 154 78.46 1exbA 332 78.48 c.1.7.1 28666 1a0gA 282 78.61 e.17.1.1 43276 2iwaA 266 78.88 1pwgA 349 79.63 e.3.1.1 104340 1oftA 161 80.31 c.37.1.22 86968 1clxA 347 80.45 c.1.8.3 28899 1lqaA 346 80.93 c.1.7.1 84674 1sdeA 347 80.95 e.3.1.1 112073 2ge3A 170 81.92 d.108.1.1 135044 1wekA 217 81.95 c.129.1.1 114553 1s2dA 167 82.06 c.23.14.1 98377 1x0pA 143 82.77 d.58.10.2 121552 1n8jA 186 83.03 c.47.1.10 85401 1i5gA 144 84.23 c.47.1.10 61784 1qopA 268 84.50 c.1.2.4 28570 1q8rA 120 85.60 d.79.6.1 96225 2c4wA 176 86.03 1fnc 314 86.97 1gz0A 253 88.75 c.116.1.1,d.79.3.3 76391,76392 2obiA 183 89.14 1s3zA 165 89.98 d.108.1.1 105250