# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.09e-103 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.05e-66 c.55.3.10 120785 1r4kA 169 1.14e-21 b.34.14.1 96997 1si2A 149 4.51e-16 b.34.14.1 105569 2qh9A 184 0.05928 1jx6A 342 0.09898 c.93.1.1 67406 1lylA 504 2.442 b.40.4.1,d.104.1.1 25261,40717 2ch4A 320 3.699 b.40.7.1,d.122.1.3 130447,130448 1gudA 288 3.905 c.93.1.1 83326 2bm8A 236 4.400 c.66.1.50 128771 1vheA 373 4.690 b.49.3.1,c.56.5.4 100669,100670 2hqbA 296 5.861 1zrhA 274 7.755 1e1oA 504 7.756 b.40.4.1,d.104.1.1 25258,40714 1uozA 315 8.668 c.6.1.1 113354 1iauA 227 9.173 b.47.1.2 62124 1mkzA 172 9.620 c.57.1.1 84998 1fftB 315 10.59 b.6.1.2,f.17.2.1 23025,43628 1qopB 396 11.09 c.79.1.1 35270 2hu5A 582 12.86 b.69.7.2,c.69.1.33 136763,136764 1o6gA 710 14.34 b.69.7.1,c.69.1.4 81087,81088 1kfcA 268 15.20 c.1.2.4 77371 1rypE 242 20.01 d.153.1.4 41936 1ig8A 486 20.92 c.55.1.3,c.55.1.3 64746,64747 2bvcA 486 21.04 d.15.9.1,d.128.1.1 129243,129244 1rypL 212 23.71 d.153.1.4 41880 1dorA 311 24.11 c.1.4.1 28595 1jubA 311 24.74 c.1.4.1 90908 2i75A 320 24.85 3d3aA 612 25.48 2pgfA 371 26.22 1v10A 521 26.60 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 3c7bB 366 27.76 2fp8A 322 28.15 1f52A 468 29.84 d.15.9.1,d.128.1.1 37839,41169 1fa0A 537 29.93 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1o12A 376 30.40 b.92.1.5,c.1.9.10 80758,80759 2hc1A 291 30.63 1g0uC 243 30.96 d.153.1.4 41948 1qunB 279 30.99 b.2.3.2,b.2.3.2 22411,22412 2h5uA 499 32.01 1cfr 285 32.02 1gakA 141 32.41 a.19.1.1 16415 1st9A 143 33.24 c.47.1.10 98987 1d0iA 156 35.15 c.23.13.1 31383 2d16A 162 35.71 1adjA 421 35.92 c.51.1.1,d.104.1.1 33188,40737 1cozA 129 36.72 c.26.1.2 31598 1v0lA 313 37.72 c.1.8.3 108207 1j8fA 323 38.32 c.31.1.5 62738 3cokA 278 38.42 1gtzA 156 38.71 c.23.13.1 70539 1k4mA 213 39.04 c.26.1.3 77258 1rlhA 173 39.84 d.256.1.1 97646 2b1kA 168 41.15 2shpA 525 45.19 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2uuuA 584 45.56 1xzoA 174 46.99 c.47.1.10 122474 1f6yA 262 47.71 c.1.21.2 29673 1vpt 348 47.88 1vm8A 534 49.71 c.68.1.5 113670 1rypC 244 50.87 d.153.1.4 41934 2c0hA 353 51.02 c.1.8.3 129594 1h4vB 421 52.08 c.51.1.1,d.104.1.1 60624,60625 2h30A 164 52.66 1i1nA 226 52.74 c.66.1.7 71102 1pj5A 830 53.17 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2qv7A 337 53.36 2j01Q 141 55.90 1l1eA 287 56.16 c.66.1.18 73454 1lci 550 56.99 1qsmA 152 57.57 d.108.1.1 40808 2q9oA 559 58.33 1va6A 518 58.34 d.128.1.4 113598 2hq4A 161 58.87 1a4mA 349 59.32 c.1.9.1 29014 2o2gA 223 59.40 1ujpA 271 59.62 c.1.2.4 99462 1nktA 922 61.75 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1sxjA 511 62.32 a.80.1.1,c.37.1.20 106081,106082 2cf8H 257 63.49 2as0A 396 64.05 b.122.1.9,c.66.1.51 127227,127228 1l0wA 580 65.12 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2fdxA 138 65.58 c.23.5.1 31192 1ufaA 520 66.22 a.8.3.3,c.6.2.4 99329,99330 1ep3A 311 66.28 c.1.4.1 28597 2i6jA 161 66.54 1ug0A 88 66.63 a.217.1.1 107822 2hjhA 354 67.85 1ywrA 360 69.08 1m0wA 491 69.70 c.30.1.4,d.142.1.6 78363,78364 2v1xA 591 70.74 2qdxA 257 70.93 1uiuA 502 71.00 c.94.1.1 99434 2iwaA 266 73.18 3pte 349 73.53 2ywiA 196 75.12 2o0jA 385 75.59 1g0cA 364 77.87 c.1.8.3 60165 2fqxA 318 78.01 1vfvA 366 78.36 c.37.1.9 108592 2d0bA 310 79.32 1vzoA 355 79.72 d.144.1.7 108971 1xyzA 347 80.19 c.1.8.3 28804 2iutA 574 80.53 1amuA 563 80.67 e.23.1.1 43351 1dzlA 505 81.82 b.121.6.1 23586 1u3dA 509 82.03 a.99.1.1,c.28.1.1 107638,107639 1o9gA 250 82.67 c.66.1.29 86692 2ovxA 159 84.70 d.92.1.11 139388 1mmqA 170 85.03 d.92.1.11 40396 2pa5A 314 85.58 1gskA 513 86.41 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2gaeA 346 86.82 1rypF 233 87.11 d.153.1.4 41937 1q77A 138 88.81 c.26.2.4 96023 1mdbA 539 89.41 e.23.1.1 79008 1ni9A 338 89.77 e.7.1.2 85739