# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.35e-112 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 4.78e-73 c.55.3.10 120785 1r4kA 169 4.16e-24 b.34.14.1 96997 1si2A 149 1.29e-18 b.34.14.1 105569 1jx6A 342 0.02111 c.93.1.1 67406 2qh9A 184 0.02849 2ch4A 320 0.5689 b.40.7.1,d.122.1.3 130447,130448 1lylA 504 0.7924 b.40.4.1,d.104.1.1 25261,40717 2qv7A 337 4.090 1vheA 373 5.512 b.49.3.1,c.56.5.4 100669,100670 1gudA 288 5.569 c.93.1.1 83326 1mkzA 172 6.071 c.57.1.1 84998 1e1oA 504 6.517 b.40.4.1,d.104.1.1 25258,40714 1xzoA 174 7.660 c.47.1.10 122474 2o2gA 223 8.692 1qgoA 264 9.107 c.92.1.2 35596 1kfcA 268 9.738 c.1.2.4 77371 2bm8A 236 9.933 c.66.1.50 128771 1d0iA 156 10.34 c.23.13.1 31383 1vm8A 534 10.36 c.68.1.5 113670 1fnnA 389 11.04 a.4.5.11,c.37.1.20 16129,32426 1m0wA 491 11.23 c.30.1.4,d.142.1.6 78363,78364 1i1nA 226 12.34 c.66.1.7 71102 1gtzA 156 12.46 c.23.13.1 70539 1qsmA 152 13.91 d.108.1.1 40808 1rypL 212 14.14 d.153.1.4 41880 1zrhA 274 14.23 1f0iA 504 14.49 d.136.1.2,d.136.1.2 59566,59567 8abp 306 15.76 1sekA 378 16.72 e.1.1.1 42675 3d3aA 612 19.20 3pte 349 19.55 1mdbA 539 19.99 e.23.1.1 79008 1o12A 376 20.14 b.92.1.5,c.1.9.10 80758,80759 1rypC 244 21.31 d.153.1.4 41934 2vdxA 373 21.32 1fh9A 312 22.62 c.1.8.3 28913 1f6yA 262 24.41 c.1.21.2 29673 1uozA 315 24.94 c.6.1.1 113354 2fdxA 138 25.02 c.23.5.1 31192 1u3dA 509 25.06 a.99.1.1,c.28.1.1 107638,107639 2nxfA 322 27.09 1fa0A 537 28.55 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1st9A 143 28.63 c.47.1.10 98987 2hqbA 296 29.33 1gakA 141 29.38 a.19.1.1 16415 1kb9B 352 30.06 d.185.1.1,d.185.1.1 77313,77314 1qunB 279 31.78 b.2.3.2,b.2.3.2 22411,22412 2ywiA 196 32.41 2fqxA 318 33.08 1byqA 228 34.53 d.122.1.1 41100 1q77A 138 34.98 c.26.2.4 96023 1zxxA 319 35.02 1yxaA 398 38.70 1klfB 279 39.08 b.2.3.2,b.2.3.2 72684,72685 1g0uC 243 39.66 d.153.1.4 41948 1tjyA 316 40.85 c.93.1.1 107062 2j01Q 141 41.28 1f52A 468 42.00 d.15.9.1,d.128.1.1 37839,41169 1k4mA 213 42.07 c.26.1.3 77258 1sdeA 347 42.27 e.3.1.1 112073 2oayA 391 42.64 1amuA 563 43.48 e.23.1.1 43351 1lci 550 43.88 2dxqA 150 44.65 1vpt 348 45.24 2vupA 190 45.55 2qwxA 231 46.28 1ujpA 271 46.90 c.1.2.4 99462 1kwgA 645 48.75 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1v25A 541 49.21 e.23.1.1 108275 1cozA 129 49.65 c.26.1.2 31598 1k1xA 659 50.54 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3by5A 155 50.92 2qk1A 249 51.85 1pj5A 830 51.88 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2dhqA 146 52.18 c.23.13.1 31382 1yumA 242 52.37 1i58A 189 52.58 d.122.1.3 61773 3c8cA 240 54.45 1qsoA 149 55.24 d.108.1.1 40812 1xyzA 347 55.52 c.1.8.3 28804 1rypE 242 55.85 d.153.1.4 41936 1rlhA 173 56.20 d.256.1.1 97646 1yqsA 349 56.80 e.3.1.1 123899 1rypA 243 57.22 d.153.1.4 41932 1xhbA 472 59.44 b.42.2.1,c.68.1.17 115290,115291 2e7jA 371 60.64 1h05A 146 62.21 c.23.13.1 76433 1v95A 130 62.47 c.51.1.1 108435 1r26A 125 62.64 c.47.1.1 96847 1jv1A 505 63.07 c.68.1.5 71892 2d16A 162 63.69 2zogA 479 63.77 2nx2A 181 64.12 3cpxA 321 64.92 2uyzB 79 66.53 d.15.1.1 140039 2b1kA 168 67.04 2d5rA 252 67.26 2dri 271 67.65 1qopB 396 68.22 c.79.1.1 35270 2q4vA 170 70.17 d.108.1.1 139878 1nktA 922 70.47 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1u4nA 310 70.62 c.69.1.2 113021 2g4rA 160 72.12 1gskA 513 72.56 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1q8rA 120 75.16 d.79.6.1 96225 1ni9A 338 75.63 e.7.1.2 85739 3daaA 277 76.26 e.17.1.1 43272 1wviA 257 76.28 c.108.1.14 114915 1vk1A 242 76.58 d.268.1.2 108634 1rgyA 360 77.12 e.3.1.1 97456 1o9gA 250 77.22 c.66.1.29 86692 1cfr 285 78.32 1adjA 421 78.78 c.51.1.1,d.104.1.1 33188,40737 1twiA 434 78.83 b.49.2.3,c.1.6.1 107399,107400 1rypF 233 79.57 d.153.1.4 41937 1zclA 180 79.68 1yub 245 80.29 1v71A 323 80.77 c.79.1.1 119859 1w9yA 319 81.22 b.82.2.1 120801 1dbqA 289 81.37 c.93.1.1 35666 1tv8A 340 83.17 c.1.28.3 107352 1vgjA 184 83.51 1yvoA 172 83.55 d.108.1.1 124106 2hq4A 161 84.79 1ep3A 311 85.96 c.1.4.1 28597 2fg1A 158 86.90 c.50.1.2 133400 1mk4A 157 87.01 d.108.1.1 84979 1t5hX 504 87.04 e.23.1.1 106449 1qgdA 662 87.16 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2fvgA 340 88.52 b.49.3.1,c.56.5.4 134201,134202 1c4zA 358 88.60 d.148.1.1 41766 2a4nA 182 88.96 d.108.1.1 126159 1pwgA 349 89.91 e.3.1.1 104340