# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.14e-123 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 8.61e-81 c.55.3.10 120785 1r4kA 169 9.51e-26 b.34.14.1 96997 1si2A 149 8.98e-20 b.34.14.1 105569 2qh9A 184 0.01111 1jx6A 342 0.01466 c.93.1.1 67406 1lylA 504 0.3773 b.40.4.1,d.104.1.1 25261,40717 2ch4A 320 1.073 b.40.7.1,d.122.1.3 130447,130448 1gudA 288 1.198 c.93.1.1 83326 2bm8A 236 2.951 c.66.1.50 128771 1vm8A 534 3.671 c.68.1.5 113670 1vheA 373 3.717 b.49.3.1,c.56.5.4 100669,100670 1e1oA 504 3.886 b.40.4.1,d.104.1.1 25258,40714 2qv7A 337 6.014 1kfcA 268 6.848 c.1.2.4 77371 1mkzA 172 9.389 c.57.1.1 84998 1rypL 212 11.13 d.153.1.4 41880 1mdbA 539 11.95 e.23.1.1 79008 1fa0A 537 12.59 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1xzoA 174 14.83 c.47.1.10 122474 1zrhA 274 15.70 1qgoA 264 15.88 c.92.1.2 35596 1tjyA 316 16.16 c.93.1.1 107062 1fnnA 389 16.93 a.4.5.11,c.37.1.20 16129,32426 1rlhA 173 17.42 d.256.1.1 97646 3d3aA 612 17.67 8abp 306 18.67 1uozA 315 22.00 c.6.1.1 113354 1i1nA 226 22.06 c.66.1.7 71102 1cozA 129 22.51 c.26.1.2 31598 1gskA 513 22.58 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 3pte 349 22.75 2fdxA 138 23.62 c.23.5.1 31192 1vpt 348 24.45 1rypE 242 25.34 d.153.1.4 41936 1gtzA 156 25.35 c.23.13.1 70539 1qsmA 152 25.92 d.108.1.1 40808 1d0iA 156 26.26 c.23.13.1 31383 1k4mA 213 26.72 c.26.1.3 77258 2j01Q 141 26.77 1rypC 244 27.08 d.153.1.4 41934 1q77A 138 27.66 c.26.2.4 96023 2hqbA 296 27.70 1f52A 468 28.60 d.15.9.1,d.128.1.1 37839,41169 1f0iA 504 29.73 d.136.1.2,d.136.1.2 59566,59567 2qdxA 257 29.97 2hq4A 161 30.52 2bvcA 486 30.82 d.15.9.1,d.128.1.1 129243,129244 1m0wA 491 32.02 c.30.1.4,d.142.1.6 78363,78364 2dri 271 32.16 1amuA 563 33.12 e.23.1.1 43351 2iwaA 266 33.27 2fqxA 318 35.18 1lci 550 35.19 1qopB 396 35.24 c.79.1.1 35270 1tv8A 340 35.34 c.1.28.3 107352 2d16A 162 35.55 1f6yA 262 35.91 c.1.21.2 29673 2qk1A 249 35.93 1qunB 279 37.02 b.2.3.2,b.2.3.2 22411,22412 1cfr 285 38.18 1nktA 922 39.20 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 3by3A 301 39.49 1v95A 130 39.58 c.51.1.1 108435 1xhbA 472 39.71 b.42.2.1,c.68.1.17 115290,115291 2o2gA 223 40.22 1yumA 242 41.19 3c8cA 240 41.75 1byqA 228 41.88 d.122.1.1 41100 1st9A 143 42.10 c.47.1.10 98987 1v71A 323 44.11 c.79.1.1 119859 1a4mA 349 44.40 c.1.9.1 29014 1l0wA 580 44.57 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1adjA 421 45.71 c.51.1.1,d.104.1.1 33188,40737 2dxqA 150 48.61 3cpxA 321 49.10 2hc1A 291 49.22 1ujpA 271 49.27 c.1.2.4 99462 1gakA 141 50.08 a.19.1.1 16415 1fftB 315 51.02 b.6.1.2,f.17.2.1 23025,43628 1bu6O 501 51.95 c.55.1.4,c.55.1.4 33499,33500 1kb9B 352 51.97 d.185.1.1,d.185.1.1 77313,77314 2vdxA 373 52.13 3daaA 277 52.79 e.17.1.1 43272 1wekA 217 53.28 c.129.1.1 114553 2pa5A 314 54.02 1g0uC 243 54.13 d.153.1.4 41948 2uuuA 584 54.26 1ywrA 360 54.44 2ywiA 196 55.55 1nt4A 391 55.85 c.60.1.2 92102 2b1kA 168 56.49 1wrbA 253 57.45 c.37.1.19 121192 2fg1A 158 57.56 c.50.1.2 133400 1t5hX 504 60.21 e.23.1.1 106449 2vupA 190 61.26 1t17A 148 62.26 d.129.3.6 112215 1sdeA 347 62.27 e.3.1.1 112073 2arkA 188 63.44 c.23.5.8 127202 1j8yF 297 63.56 a.24.13.1,c.37.1.10 62747,62748 1zsxA 347 64.53 1a8pA 258 65.68 b.43.4.2,c.25.1.1 25654,31544 1vk1A 242 66.09 d.268.1.2 108634 2dp9A 124 66.41 b.122.1.5 131609 1yqsA 349 67.46 e.3.1.1 123899 1ig8A 486 67.84 c.55.1.3,c.55.1.3 64746,64747 1o12A 376 68.19 b.92.1.5,c.1.9.10 80758,80759 1sekA 378 68.26 e.1.1.1 42675 1iauA 227 68.73 b.47.1.2 62124 1ef1A 294 70.84 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1bowA 159 71.38 d.60.1.1 39528 1dbqA 289 71.42 c.93.1.1 35666 2i75A 320 72.11 1efyA 350 72.57 a.41.1.1,d.166.1.2 17413,42275 3by5A 155 73.07 1rgyA 360 73.57 e.3.1.1 97456 1dorA 311 74.05 c.1.4.1 28595 1r26A 125 74.69 c.47.1.1 96847 2nx2A 181 75.75 2ga9A 297 76.03 c.66.1.25 134885 1s2dA 167 76.07 c.23.14.1 98377 1u0tA 307 76.69 e.52.1.1 107567 1fnc 314 78.68 1sviA 195 78.70 c.37.1.8 106048 1u3dA 509 78.80 a.99.1.1,c.28.1.1 107638,107639 1qsoA 149 79.55 d.108.1.1 40812 2qalC 232 79.75 1klfB 279 82.75 b.2.3.2,b.2.3.2 72684,72685 1ep3A 311 83.48 c.1.4.1 28597 2h8eA 120 84.07 1yvoA 172 84.72 d.108.1.1 124106 2pjdA 343 85.95 1oftA 161 86.36 c.37.1.22 86968 1v25A 541 86.83 e.23.1.1 108275 1xyzA 347 86.98 c.1.8.3 28804 2zogA 479 87.46 1qhiA 366 87.68 c.37.1.1 31860 2c4wA 176 88.11 2r16A 182 88.77 1h4vB 421 88.88 c.51.1.1,d.104.1.1 60624,60625 1vptA 348 89.32 c.66.1.25 34207 1a0gA 282 89.40 e.17.1.1 43276