# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.87e-72 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.36e-47 c.55.3.10 120785 1r4kA 169 2.22e-16 b.34.14.1 96997 1si2A 149 2.77e-11 b.34.14.1 105569 1gudA 288 0.07938 c.93.1.1 83326 1lylA 504 0.1234 b.40.4.1,d.104.1.1 25261,40717 1jx6A 342 0.2969 c.93.1.1 67406 2hqbA 296 1.231 1e1oA 504 1.331 b.40.4.1,d.104.1.1 25258,40714 1yx1A 264 4.198 c.1.15.7 124169 2dri 271 4.520 2qh9A 184 4.573 1srqA 341 5.113 e.55.1.1 105967 1dbqA 289 6.496 c.93.1.1 35666 3cpxA 321 6.766 1bykA 255 6.858 c.93.1.1 35706 1mkzA 172 7.036 c.57.1.1 84998 1ig8A 486 7.471 c.55.1.3,c.55.1.3 64746,64747 2pt7A 330 8.125 1r42A 615 9.479 d.92.1.5 96968 1rypC 244 9.555 d.153.1.4 41934 1jftA 340 10.88 a.35.1.5,c.93.1.1 66652,66653 2glfA 450 11.79 1d0iA 156 11.81 c.23.13.1 31383 1gtzA 156 13.38 c.23.13.1 70539 1kyzA 365 13.63 a.4.5.29,c.66.1.12 73312,73313 8abp 306 14.67 2ioyA 283 14.91 8abpA 306 18.08 c.93.1.1 35647 2dxnA 274 18.22 1vm8A 534 18.41 c.68.1.5 113670 2yx1A 336 24.39 1gca 309 24.44 1g0uC 243 24.90 d.153.1.4 41948 3bjuA 521 25.58 2vguA 407 25.82 3c8cA 240 29.00 2fvyA 309 31.68 c.93.1.1 134227 1rgyA 360 32.17 e.3.1.1 97456 2viaA 405 32.20 2yhx 457 32.42 1rypF 233 32.58 d.153.1.4 41937 3c6qA 311 32.99 1dceA 567 37.23 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1rypA 243 37.82 d.153.1.4 41932 2g2cA 167 38.40 c.57.1.1 134535 1y1uA 585 38.76 2fn9A 290 38.79 1nv8A 284 39.24 c.66.1.30 86224 1cs8A 316 39.70 d.3.1.1 37065 2fp3A 316 39.83 2gz6A 388 40.88 2fepA 289 42.42 1sh5A 245 42.72 a.40.1.1,a.40.1.1 105543,105544 2opwA 291 43.51 4xis 387 44.70 1l0gA 358 47.58 e.3.1.1 73400 2csgA 424 48.10 b.82.2.12 130768 2rgyA 290 49.30 1te2A 226 49.69 c.108.1.6 106792 2basA 431 50.00 c.1.33.1,d.110.6.2 128244,128245 1up8A 598 51.11 a.111.1.2 99710 1fsyA 358 53.84 e.3.1.1 60016 1af7A 274 54.15 a.58.1.1,c.66.1.8 17928,34203 2frnA 278 54.80 c.66.1.47 133993 1kz7A 353 55.16 a.87.1.1,b.55.1.1 73333,73334 2bm8A 236 55.29 c.66.1.50 128771 2fvgA 340 57.01 b.49.3.1,c.56.5.4 134201,134202 1z2lA 423 58.11 c.56.5.4,d.58.19.1 124383,124384 1t98A 287 58.48 a.4.5.65,a.47.6.1 119196,119197 2g4rA 160 58.78 2hjhA 354 59.42 1v9cA 218 59.68 c.23.17.1 100533 1vqqA 646 60.15 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2qv7A 337 62.23 2go7A 207 62.29 c.108.1.6 135434 1xcrA 316 62.71 d.290.1.2 121860 1rifA 282 62.74 c.37.1.23 97507 1rgzA 363 63.69 e.3.1.1 97457 2c1gA 431 63.99 c.6.2.3,d.341.1.1 129632,129633 2ojwA 384 64.67 2og2A 359 65.83 1t17A 148 65.84 d.129.3.6 112215 2driA 271 66.65 c.93.1.1 35637 2ywiA 196 68.32 1zs9A 261 68.88 c.108.1.22 125600 1rypE 242 70.31 d.153.1.4 41936 2pqfA 198 72.28 1qsmA 152 72.86 d.108.1.1 40808 2qwxA 231 73.11 1h05A 146 73.74 c.23.13.1 76433 1ci9A 392 75.03 e.3.1.1 64767 1rypG 244 75.29 d.153.1.4 41938 1cvrA 435 75.39 b.1.18.12,c.17.1.2 21949,31006 1vrmA 325 76.00 d.96.2.1 120472 1h4vB 421 76.10 c.51.1.1,d.104.1.1 60624,60625 2ffyA 358 77.30 e.3.1.1 133394 2de0X 526 78.45 1m1nA 491 79.56 c.92.2.3 78417 1s2dA 167 81.18 c.23.14.1 98377 1t4fM 110 82.70 a.42.1.1 119144 2dyoA 297 82.90 1vh0A 161 83.53 c.116.1.3 100626 2r4fA 441 83.70 1phnB 172 84.50 a.1.1.3 15642 1m1nB 522 84.99 c.92.2.3 78418 1mswD 883 85.44 e.8.1.3 79427 1i5pA 633 85.74 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1tjyA 316 86.51 c.93.1.1 107062 2q62A 247 88.24 1yqsA 349 88.45 e.3.1.1 123899