# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.11e-72 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 3.58e-47 c.55.3.10 120785 1r4kA 169 1.43e-16 b.34.14.1 96997 1si2A 149 9.34e-12 b.34.14.1 105569 1gudA 288 0.1967 c.93.1.1 83326 1jx6A 342 0.2294 c.93.1.1 67406 2qh9A 184 0.6565 1gca 309 1.519 2f48A 555 2.716 c.89.1.1 132915 1tjyA 316 4.271 c.93.1.1 107062 1dbqA 289 5.116 c.93.1.1 35666 1gtzA 156 5.987 c.23.13.1 70539 2hqbA 296 6.113 1d0iA 156 6.554 c.23.13.1 31383 2nvoA 535 10.62 1adjA 421 14.33 c.51.1.1,d.104.1.1 33188,40737 1lylA 504 14.47 b.40.4.1,d.104.1.1 25261,40717 1ig8A 486 14.60 c.55.1.3,c.55.1.3 64746,64747 3crjA 199 14.93 8abp 306 16.33 2ch4A 320 17.65 b.40.7.1,d.122.1.3 130447,130448 2v1xA 591 18.18 2vguA 407 18.56 2viaA 405 19.69 1kz7A 353 21.52 a.87.1.1,b.55.1.1 73333,73334 8abpA 306 22.85 c.93.1.1 35647 1dysA 348 23.63 c.6.1.1 30669 1zxxA 319 25.32 1fa0A 537 25.52 d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1j8yF 297 26.85 a.24.13.1,c.37.1.10 62747,62748 2c4wA 176 26.88 1wkvA 389 28.09 c.79.1.1 120989 2px0A 296 28.95 2odaA 196 30.46 2hufA 393 31.36 1mmqA 170 31.72 d.92.1.11 40396 2qv7A 337 34.17 2gzxA 265 35.40 2fg1A 158 36.43 c.50.1.2 133400 2qh8A 302 36.83 1e1oA 504 38.67 b.40.4.1,d.104.1.1 25258,40714 1f5aA 513 40.91 d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1h05A 146 41.96 c.23.13.1 76433 2dxnA 274 42.02 1u0tA 307 43.02 e.52.1.1 107567 3cpxA 321 43.14 1cqqA 180 43.26 b.47.1.4 26422 2dri 271 43.57 1evlA 401 44.45 c.51.1.1,d.104.1.1 33202,40751 1r9lA 309 45.47 c.94.1.1 97262 2q62A 247 46.32 1x1iA 752 46.76 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1t8sA 484 46.86 c.56.2.1 106679 1bykA 255 47.50 c.93.1.1 35706 2a0uA 383 48.42 1vm8A 534 48.61 c.68.1.5 113670 1pswA 348 49.32 c.87.1.7 88287 1f4pA 147 50.18 c.23.5.1 59651 7a3hA 303 50.25 c.1.8.3 28817 1jftA 340 50.85 a.35.1.5,c.93.1.1 66652,66653 1n7kA 234 51.12 c.1.10.1 85374 2yhx 457 51.95 3c7bB 366 52.63 1k4mA 213 53.74 c.26.1.3 77258 2ywiA 196 57.39 1mkzA 172 57.66 c.57.1.1 84998 1xcrA 316 59.46 d.290.1.2 121860 1c4oA 664 60.25 c.37.1.19,c.37.1.19 32415,32416 2dhqA 146 60.46 c.23.13.1 31382 1qh8A 478 60.54 c.92.2.3 35633 2fvyA 309 60.57 c.93.1.1 134227 2pt7A 330 60.63 2uuuA 584 60.98 1v7pC 200 61.99 c.62.1.1 108408 1kngA 156 62.30 c.47.1.10 72777 2obiA 183 62.72 1i5gA 144 63.14 c.47.1.10 61784 1h4vB 421 63.14 c.51.1.1,d.104.1.1 60624,60625 3c8cA 240 65.84 1st9A 143 72.67 c.47.1.10 98987 1htyA 1015 73.67 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2fqxA 318 73.81 3pte 349 74.00 1f8yA 157 75.94 c.23.14.1 31395 2fdxA 138 76.22 c.23.5.1 31192 2v9cA 215 77.10 1cb8A 678 77.95 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2ovxA 159 79.39 d.92.1.11 139388 1hnjA 317 79.91 c.95.1.2,c.95.1.2 35969,35970 1w99A 558 82.42 1nc5A 373 82.44 a.102.1.6 85548 1vrmA 325 83.08 d.96.2.1 120472 1k1xA 659 83.90 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1vh0A 161 83.97 c.116.1.3 100626 1qdlA 422 84.01 d.161.1.1 42088 1yqsA 349 87.38 e.3.1.1 123899 1m0wA 491 87.96 c.30.1.4,d.142.1.6 78363,78364 2hi6A 141 88.14 c.8.2.3 136523 1cvrA 435 88.25 b.1.18.12,c.17.1.2 21949,31006 1rpxA 230 89.74 c.1.2.2 28536