# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 7.39e-22 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.42e-13 c.55.3.10 120785 1si2A 149 0.1782 b.34.14.1 105569 1r4kA 169 0.3091 b.34.14.1 96997 1fc6A 388 5.251 b.36.1.3,c.14.1.2 64738,64739 1zq1A 438 5.390 b.38.3.1,c.88.1.1 125489,125490 1qf6A 642 8.062 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1zu0A 529 8.259 2c1gA 431 8.296 c.6.2.3,d.341.1.1 129632,129633 2hu5A 582 10.54 b.69.7.2,c.69.1.33 136763,136764 1h2wA 710 14.82 b.69.7.1,c.69.1.4 76596,76597 1ykwA 435 15.34 c.1.14.1,d.58.9.1 123565,123566 2og2A 359 16.65 2dexX 671 18.05 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1xocA 520 18.57 c.94.1.1 122201 1ek4A 418 19.27 c.95.1.1,c.95.1.1 59436,59437 1uiuA 502 22.05 c.94.1.1 99434 2nooA 502 25.76 1xfdA 723 25.76 b.70.3.1,c.69.1.24 115251,115252 2zd1A 557 25.80 1qfmA 710 26.00 b.69.7.1,c.69.1.4 27673,34641 1eovA 487 26.99 b.40.4.1,d.104.1.1 25239,40760 2bywA 418 27.75 c.95.1.1,c.95.1.1 129498,129499 1mi1A 414 28.97 a.169.1.1,b.55.1.6 79137,79138 1wohA 305 29.40 c.42.1.1 109446 2d69A 430 30.80 c.1.14.1,d.58.9.1 131292,131293 2gk6A 624 30.86 2bklA 695 31.00 2eabA 899 32.26 1xdpA 687 34.54 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1x54A 434 35.81 2o0mA 345 37.53 1wdaA 670 38.66 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2gokA 429 38.78 2gelA 231 40.12 2qh8A 302 40.16 1u6eA 335 40.52 c.95.1.2,c.95.1.2 119568,119569 3c6kA 381 41.34 1y4iA 398 41.42 c.67.1.3 122619 1l0wA 580 42.18 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1bykA 255 46.09 c.93.1.1 35706 1hnjA 317 46.16 c.95.1.2,c.95.1.2 35969,35970 2o7iA 592 48.25 2eq5A 228 48.29 2bduA 297 50.01 1b8aA 438 51.24 b.40.4.1,d.104.1.1 25244,40765 1mx0A 472 51.78 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1hzpA 335 53.78 c.95.1.2,c.95.1.2 61455,61456 1zowA 313 54.82 2gtqA 867 55.21 2gnpA 266 55.71 1z5oA 242 57.15 2vbaA 406 57.59 1lylA 504 57.66 b.40.4.1,d.104.1.1 25261,40717 1h05A 146 61.62 c.23.13.1 76433 2g50A 530 62.17 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2grvA 621 62.40 2hivA 621 62.50 3bjuA 521 62.53 1uwvA 433 63.80 b.40.4.12,c.66.1.40 100128,100129 2yrrA 353 65.51 1mzjA 339 65.72 c.95.1.2,c.95.1.2 79700,79701 2okgA 255 66.17 1yr2A 741 66.94 2vgnA 386 67.50 1vjrA 271 68.79 c.108.1.14 100832 2pvrA 334 69.02 1cliA 345 69.09 d.79.4.1,d.139.1.1 39816,41459 1rlmA 271 69.58 c.108.1.10 111860 3bg1B 442 70.40 2h3gX 268 70.67 1vqqA 646 71.93 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2c9hA 444 72.03 1eudB 396 72.28 c.23.4.1,d.142.1.4 31150,41571 1jx6A 342 73.96 c.93.1.1 67406 1e0tA 470 74.12 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1zs9A 261 76.26 c.108.1.22 125600 1orvA 728 76.94 b.70.3.1,c.69.1.24 87354,87355 1dxyA 333 77.64 c.2.1.4,c.23.12.1 30094,31354 1uekA 275 77.99 d.14.1.5,d.58.26.5 88483,88484 2ebdA 309 78.26 1zlqA 502 78.77 c.94.1.1 125253 1cs1A 386 78.81 c.67.1.3 34399 1l6rA 227 81.64 c.108.1.10 77768 2dgdA 223 82.33 3b8xA 390 82.55 2hszA 243 82.60 c.108.1.6 136726 2c1iA 431 83.99 c.6.2.3,d.341.1.1 129636,129637 2qddA 378 84.08 3boeA 210 85.18 1gudA 288 85.26 c.93.1.1 83326 1sy7A 715 86.67 c.23.16.3 112161 1gk8A 475 86.80 c.1.14.1,d.58.9.1 65234,65235 1yb5A 351 87.01 b.35.1.2,c.2.1.1 116601,116602 1aszB 490 88.13 b.40.4.1,d.104.1.1 25241,40762 2dejA 350 89.22