# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ut8A 291 2.790 a.60.7.1,c.120.1.2 99908,99909 2axtC 473 2.872 1tuhA 156 3.254 d.17.4.11 107345 2hjhA 354 6.181 1mx0A 472 8.485 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2hkjA 469 9.647 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 3bdzA 397 9.737 2jdiA 510 10.93 1ppjB 439 11.73 d.185.1.1,d.185.1.1 104254,104255 1flzA 228 11.78 c.18.1.1 31027 1c3qA 272 13.28 c.72.1.2 118436 2nsmA 439 13.42 1zy9A 564 13.83 b.30.5.11,c.1.8.13 125813,125814 1zzmA 259 14.70 c.1.9.12 125911 1dxeA 256 15.08 c.1.12.5 29310 4eugA 229 15.40 c.18.1.1 31019 3eugA 229 15.47 c.18.1.1 31018 1wvvA 265 18.52 2euaA 431 19.33 d.161.1.1 132380 1vqqA 646 19.80 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1s6cA 183 19.92 a.39.1.5 98594 2f2sA 406 20.25 2ib8A 395 21.06 2gz1A 366 21.88 c.2.1.3,d.81.1.1 135887,135888 1bqg 451 22.56 1fohA 664 23.17 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2gruA 368 23.28 1cz7A 406 24.27 c.37.1.9 32194 1uufA 369 24.35 b.35.1.2,c.2.1.1 100006,100007 1n67A 359 24.38 b.2.3.4,b.2.3.4 85354,85355 2basA 431 24.86 c.1.33.1,d.110.6.2 128244,128245 2q62A 247 25.71 1r6dA 337 27.84 c.2.1.2 97148 1rroA 108 28.15 a.39.1.4 17195 2hehA 387 30.35 1wl4A 397 30.84 2nx9A 464 31.89 1hv8A 367 32.87 c.37.1.19,c.37.1.19 32405,32406 1f6yA 262 32.89 c.1.21.2 29673 2o9pA 454 33.60 2o11A 407 34.41 3cobA 369 35.25 1w36B 1180 35.27 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qpbA 563 38.40 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2h58A 330 40.28 1wcgA 464 40.79 c.1.8.4 120888 1pedA 351 40.80 b.35.1.2,c.2.1.1 24753,29769 1fbaA 361 44.61 c.1.10.1 29120 1yr2A 741 44.79 1crwG 333 44.89 c.2.1.3,d.81.1.1 30026,39941 3b8dA 363 45.27 1pydA 556 47.25 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1p2fA 220 47.39 a.4.6.1,c.23.1.1 87720,87721 3c9uA 342 50.49 1ep2B 261 51.29 b.43.4.2,c.25.1.3 25666,31556 1sz2A 332 51.35 c.55.1.7 112169 1pscA 365 51.36 c.1.9.3 29058 1v0eA 666 52.12 b.68.1.2,b.108.1.3 113466,113467 2j5aA 110 52.16 2f57A 317 55.25 3bv4A 341 55.25 1yqdA 366 55.95 3b6uA 372 56.07 1nvmA 345 56.12 a.5.7.1,c.1.10.5 86249,86250 2q8zA 342 57.36 1gadO 330 57.40 c.2.1.3,d.81.1.1 29950,39865 2fdsA 352 57.88 c.1.2.3 133320 1el5A 389 58.89 c.3.1.2,d.16.1.3 30369,37937 1kcxA 518 59.48 b.92.1.3,c.1.9.6 90953,90954 2z3zA 706 60.84 2cjlA 204 60.85 1i0dA 332 61.25 c.1.9.3 61487 1rm6A 769 62.32 d.41.1.1,d.133.1.1 111872,111873 2gqwA 408 62.45 2olnA 397 63.07 1izcA 339 64.09 c.1.12.5 83838 1jjoC 261 64.96 1ca9A 192 65.72 b.8.1.1,h.1.2.1 23244,45451 1jr3A 373 65.97 a.80.1.1,c.37.1.20 63245,63246 1u0tA 307 67.29 e.52.1.1 107567 1zaiA 363 71.29 c.1.10.1 124828 1booA 323 71.77 c.66.1.11 34248 2dt4A 143 72.02 1rqbA 539 72.20 a.5.7.2,c.1.10.5 105057,105058 2vngA 180 72.92 1j31A 262 73.36 d.160.1.2 90808 1t0tV 248 75.98 d.58.4.10 106229 1fc6A 388 77.64 b.36.1.3,c.14.1.2 64738,64739 2z0bA 131 77.83 1vns 609 80.29 1zkcA 197 80.59 b.62.1.1 125182 1dqrA 557 81.02 c.80.1.2 35305 1uasA 362 81.78 b.71.1.1,c.1.8.1 88388,88389 1nffA 260 82.11 c.2.1.2 80457 1hwyA 501 82.15 c.2.1.7,c.58.1.1 30262,33910 1louA 101 84.66 d.58.14.1 39323 1vquA 374 84.97 2c61A 469 85.17 1b3jA 274 87.49 b.1.1.2,d.19.1.1 20855,38319 2e9qA 459 87.65 2ogyA 262 87.94 2rd7A 367 88.52