# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c3qA	272	3.404	c.72.1.2	118436
1hk9A	74	3.717	b.38.1.2	83541
2r76A	152	6.115		
1chd	203	9.489		
2j6pA	152	12.92		
1u1sA	82	13.97	b.38.1.2	119451
1chdA	203	15.42	c.40.1.1	32478
1ekqA	272	20.79	c.72.1.2	34941
2a2kA	175	23.34		
1x8dA	104	32.75		
1a8l	226	33.84		
1ymkA	175	34.16	c.46.1.1	123699
1louA	101	34.82	d.58.14.1	39323
1v8aA	265	35.13	c.72.1.2	100494
3c19A	186	42.09		
1ris	101	42.94		
1kq1A	77	42.95	b.38.1.2	72848
1a8lA	226	44.72	c.47.1.2,c.47.1.2	32777,32778
2gj3A	120	45.70		
1crwG	333	46.29	c.2.1.3,d.81.1.1	30026,39941
1cqmA	101	49.24	d.58.14.1	39321
2pr5A	132	52.70		
1yqzA	438	53.21		
2q7aA	152	56.10		
1vmbA	140	56.89	d.58.14.1	113672
1d7yA	408	57.00	c.3.1.5,c.3.1.5,d.87.1.1	30565,30566,40204
1j08A	226	58.53	c.47.1.2,c.47.1.2	83855,83856
2gdtA	116	61.88		
2nloA	302	63.62		
1zynA	202	67.90	c.47.1.2,c.47.1.2	125838,125839
1iuhA	198	73.46	d.61.1.2	83711
2eisA	133	77.53		
1n9lA	109	82.80	d.110.3.6	85468
1e9rA	437	84.17	c.37.1.11	64827
1ln4A	104	86.48	d.68.4.1	74043
1x24A	180	88.10		
1xccA	220	88.53	c.47.1.10	115113
2es7A	142	88.70	c.47.1.20	132314
2gqwA	408	89.15		
1ei6A	406	89.67	c.76.1.4	90443