# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o59A	355	15.18	b.18.1.22,b.18.1.22	92495,92496
1cqmA	101	17.10	d.58.14.1	39321
2j5aA	110	17.36		
1w78A	422	33.56		
2pggA	774	47.24		
2c6qA	351	49.35		
2daqA	110	56.55	b.34.9.2	131354
2yx1A	336	56.67		
1t4oA	117	57.77	d.50.1.1	106425
1ki9A	192	58.99	c.37.1.1	84404
1pbeA	394	62.21	c.3.1.2,d.16.1.2	30338,37869
2q5cA	196	63.52		
2dgkA	452	63.73		
1lr7A	74	65.66	g.3.11.3,g.68.1.1	84679,84680
1s7jA	262	66.84	d.21.1.2	98647
1wmhB	86	67.08	d.15.2.2	114745
1vmbA	140	67.64	d.58.14.1	113672
2yufA	142	71.67		
1a22B	238	72.74	b.1.2.1,b.1.2.1	22003,22004
1b8iB	63	75.47	a.4.1.1	16011
2ejaA	338	75.85		
2dvkA	188	76.74		
1ecfA	504	77.73	c.61.1.1,d.153.1.1	34053,41820
1dxjA	242	77.91	d.2.1.1	36244
2otnA	308	82.17		
1eazA	125	82.98	b.55.1.1	70113
2baa	243	86.32		
3c8uA	208	86.89		
2ex4A	241	87.61	c.66.1.42	132516
2infA	359	89.95