# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o59A	355	12.63	b.18.1.22,b.18.1.22	92495,92496
1cqmA	101	35.60	d.58.14.1	39321
2yx1A	336	37.34		
2pggA	774	40.95		
2j5aA	110	44.52		
2c6qA	351	44.55		
1qhqA	140	45.60	b.6.1.1	63326
2yufA	142	48.93		
1w78A	422	54.26		
1b8iB	63	56.81	a.4.1.1	16011
1s7jA	262	58.67	d.21.1.2	98647
1d7oA	297	61.99	c.2.1.2	29907
1ecfA	504	68.41	c.61.1.1,d.153.1.1	34053,41820
1a22B	238	70.10	b.1.2.1,b.1.2.1	22003,22004
2fuqA	747	71.77		
2baa	243	72.18		
1dxjA	242	75.15	d.2.1.1	36244
2hhpA	530	76.31	a.160.1.1,d.218.1.3,d.58.16.1	136503,136504,136505
1t4oA	117	78.12	d.50.1.1	106425
1wmhB	86	81.45	d.15.2.2	114745
2dvkA	188	83.48		
1ki9A	192	84.07	c.37.1.1	84404
2sli	679	86.52		
2q71A	356	86.80		
3cxmA	268	89.58		
1lr7A	74	89.70	g.3.11.3,g.68.1.1	84679,84680