# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o59A	355	13.55	b.18.1.22,b.18.1.22	92495,92496
2ejaA	338	18.66		
2c6qA	351	19.71		
1l5jA	865	23.13	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
1ecfA	504	23.55	c.61.1.1,d.153.1.1	34053,41820
1s7jA	262	24.44	d.21.1.2	98647
1pbeA	394	29.51	c.3.1.2,d.16.1.2	30338,37869
2z6iA	332	31.44		
1wmhB	86	31.92	d.15.2.2	114745
1t70A	255	35.29	d.159.1.9	112275
2daqA	110	36.06	b.34.9.2	131354
2fuqA	747	36.32		
1w78A	422	40.01		
1h4xA	117	40.12	c.13.2.1	60626
1c96A	753	46.42	c.8.2.1,c.83.1.1	30727,35403
2q5cA	196	47.19		
1ki9A	192	48.73	c.37.1.1	84404
1q8fA	313	50.76	c.70.1.1	96203
2elcA	329	51.42		
3cxmA	268	55.58		
2jhqA	226	58.08		
2gjlA	328	58.10		
1yoeA	322	59.20		
2i5fA	109	59.74		
2yufA	142	60.72		
1lr7A	74	62.67	g.3.11.3,g.68.1.1	84679,84680
4eugA	229	64.36	c.18.1.1	31019
2infA	359	64.54		
2q71A	356	68.41		
1cqmA	101	69.05	d.58.14.1	39321
2otnA	308	72.32		
1n9pA	207	75.92	b.1.18.16	80343
2qv7A	337	77.40		
1zynA	202	78.14	c.47.1.2,c.47.1.2	125838,125839
2i4lA	458	79.36		
1t4oA	117	81.60	d.50.1.1	106425
1wl8A	189	81.97	c.23.16.1	120997
2j5aA	110	82.55		
1bdoA	80	83.09	b.84.1.1	28214
2p6pA	384	83.71		
3cq5A	369	85.30		
2r8rA	228	86.48		
1f7uA	607	86.62	a.27.1.1,c.26.1.1,d.67.2.1	59673,59674,59675