# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o59A	355	7.076	b.18.1.22,b.18.1.22	92495,92496
1w78A	422	10.01		
1s7jA	262	14.72	d.21.1.2	98647
1ecfA	504	18.26	c.61.1.1,d.153.1.1	34053,41820
2yx1A	336	21.56		
2c6qA	351	22.21		
2j5aA	110	27.87		
1a22B	238	29.72	b.1.2.1,b.1.2.1	22003,22004
1cqmA	101	30.07	d.58.14.1	39321
2q5cA	196	34.81		
2otnA	308	38.46		
2dgkA	452	39.84		
2pggA	774	42.20		
2hjhA	354	45.67		
2okmA	147	53.06		
2sli	679	57.80		
1m3kA	392	58.80	c.95.1.1,c.95.1.1	78565,78566
1z15A	344	59.60		
2ejaA	338	59.98		
1t4oA	117	66.47	d.50.1.1	106425
2infA	359	66.63		
1ki9A	192	69.74	c.37.1.1	84404
1khvA	516	71.02	e.8.1.4	68627
1lr7A	74	73.13	g.3.11.3,g.68.1.1	84679,84680
1odfA	290	73.46	c.37.1.6	92782
2hhvA	580	73.73	c.55.3.5,e.8.1.1	136514,136515
1dxjA	242	76.79	d.2.1.1	36244
2daqA	110	80.69	b.34.9.2	131354
2fuqA	747	82.24		
2baa	243	82.36		
1b8iB	63	82.37	a.4.1.1	16011
2hcyA	347	83.87		
2akaB	299	86.90	c.37.1.8	126914
2hxmA	223	87.79	c.18.1.1	136857
1eazA	125	88.81	b.55.1.1	70113
2iutA	574	89.00