# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hjhA 354 1.043 2e01A 457 1.936 3c9uA 342 3.175 2jdiA 510 4.472 1tb3A 352 5.418 c.1.4.1 119205 2akaB 299 7.689 c.37.1.8 126914 2j5aA 110 7.883 1f9vA 347 8.861 c.37.1.9 59745 2hehA 387 13.47 2f6uA 234 13.68 c.1.4.1 133061 1zkcA 197 14.29 b.62.1.1 125182 1hdhA 536 14.30 c.76.1.2 65805 1qhqA 140 15.03 b.6.1.1 63326 3di4A 286 15.51 1lucB 324 16.01 c.1.16.1 29548 1rqbA 539 16.99 a.5.7.2,c.1.10.5 105057,105058 2puzA 419 18.37 1vns 609 19.49 1uthA 315 19.77 c.94.1.1 108032 2basA 431 20.00 c.1.33.1,d.110.6.2 128244,128245 1e8cA 498 20.22 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2gwnA 452 20.61 2qr3A 140 21.78 1suwA 249 22.07 e.52.1.1 106027 3b9oA 440 22.40 1amx 180 23.75 1nvmA 345 24.07 a.5.7.1,c.1.10.5 86249,86250 1d7oA 297 24.27 c.2.1.2 29907 3c8nA 356 24.67 2e3zA 465 24.77 2iutA 574 24.80 1n67A 359 24.83 b.2.3.4,b.2.3.4 85354,85355 1qwyA 291 25.69 b.84.3.2 96509 2otnA 308 25.73 2goyA 275 26.31 2ch5A 347 26.79 c.55.1.5,c.55.1.5 130453,130454 1eazA 125 27.50 b.55.1.1 70113 1cqmA 101 28.30 d.58.14.1 39321 1zwxA 301 28.61 d.151.1.3 125752 1v0eA 666 29.36 b.68.1.2,b.108.1.3 113466,113467 1amxA 180 29.82 b.2.3.1 22410 3b6uA 372 30.49 2irpA 208 31.73 1xtoA 311 32.87 d.157.1.6 116030 1vavA 222 33.00 b.29.1.18 108472 3cobA 369 33.55 2qqzA 126 35.22 1ppjB 439 35.87 d.185.1.1,d.185.1.1 104254,104255 2f1nA 262 36.69 d.151.1.1 132782 1tf5A 844 40.69 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2h58A 330 41.11 2gjlA 328 43.94 1lm7A 248 44.16 d.211.2.1 74031 1spxA 278 44.52 c.2.1.2 98958 2nn6B 249 45.52 1inpA 400 45.65 e.7.1.1 42972 1uufA 369 45.83 b.35.1.2,c.2.1.1 100006,100007 2ac1A 541 47.67 2fdsA 352 47.74 c.1.2.3 133320 1y5eA 169 47.80 c.57.1.1 122632 1rroA 108 48.66 a.39.1.4 17195 2biwA 490 51.74 1mtyB 384 53.25 a.25.1.2 16740 3b7fA 394 54.84 2infA 359 55.31 2daqA 110 56.12 b.34.9.2 131354 2o11A 407 56.36 2dqrA 122 56.59 2q8uA 336 56.97 1rhcA 330 57.23 c.1.16.3 97468 1dzlA 505 57.41 b.121.6.1 23586 1ezwA 349 57.87 c.1.16.3 29558 2gfiA 458 59.42 2pidA 356 59.56 1vmaA 306 59.69 a.24.13.1,c.37.1.10 108887,108888 2olnA 397 59.74 2rduA 387 61.66 1t0tV 248 61.86 d.58.4.10 106229 1u2zA 433 62.86 c.66.1.31 107626 2v5xA 388 64.96 3c86A 328 65.39 1eluA 390 65.71 c.67.1.3 34434 1zu0A 529 66.93 1c8zA 265 67.46 d.23.1.1 38375 2q5cA 196 68.20 2bnuA 203 68.46 2b4vA 468 69.76 a.160.1.4,d.218.1.10 127864,127865 1qwgA 251 69.99 c.1.27.1 96473 2hziA 277 70.51 3bdzA 397 70.55 2i5fA 109 73.12 1cr5A 189 73.47 b.52.2.3,d.31.1.1 26931,38465 1x1tA 260 73.76 c.2.1.2 121597 1v97A 1332 74.33 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2pd6A 264 74.39 2bs3A 656 74.83 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1ydnA 295 75.06 1ki9A 192 76.48 c.37.1.1 84404 7aatA 401 78.87 c.67.1.1 34250 1mpyA 307 79.34 d.32.1.3,d.32.1.3 38508,38509 2dumA 170 80.08 1z3eA 132 82.08 c.47.1.12 124400 1yc5A 246 83.40 c.31.1.5 122910 1rhyA 202 83.49 d.14.1.9,d.14.1.9 97491,97492 1vquA 374 83.55 1b5pA 385 83.67 c.67.1.1 90403 1wyuB 474 83.75 c.67.1.7 121453 1yz4A 160 84.13 2nx9A 464 84.99 1t4oA 117 86.00 d.50.1.1 106425 3cl5A 377 87.88 2iyeA 263 88.80