# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o59A	355	13.50	b.18.1.22,b.18.1.22	92495,92496
1w78A	422	27.91		
1s7jA	262	31.59	d.21.1.2	98647
1a22B	238	32.96	b.1.2.1,b.1.2.1	22003,22004
2yx1A	336	35.85		
1ecfA	504	38.49	c.61.1.1,d.153.1.1	34053,41820
2pggA	774	44.18		
1dxjA	242	46.59	d.2.1.1	36244
2ejaA	338	49.32		
1cqmA	101	57.42	d.58.14.1	39321
2otnA	308	57.59		
3cxmA	268	58.87		
2sli	679	58.94		
1b8iB	63	59.47	a.4.1.1	16011
2infA	359	61.33		
2yufA	142	61.98		
2baa	243	64.33		
2jhqA	226	70.92		
2j5aA	110	73.39		
2c6qA	351	74.91		
2dgkA	452	78.89		
2daqA	110	81.24	b.34.9.2	131354
2fuqA	747	86.15		
1eazA	125	86.84	b.55.1.1	70113
1t4oA	117	88.47	d.50.1.1	106425