# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cqmA	101	10.16	d.58.14.1	39321
3c19A	186	14.61		
2cpmA	94	16.83		
1x8dA	104	18.42		
1u8fO	335	27.71	c.2.1.3,d.81.1.1	119626,119627
1chdA	203	32.92	c.40.1.1	32478
1obfO	335	39.40	c.2.1.3,d.81.1.1	86768,86769
1hyvA	166	41.18	c.55.3.2	61424
1kq1A	77	43.15	b.38.1.2	72848
1v8aA	265	60.07	c.72.1.2	100494
2pocA	367	67.80		
2nqtA	352	67.81		
1ln4A	104	70.05	d.68.4.1	74043
1zruA	264	70.96	b.21.1.3,b.108.1.4,b.163.1.2	125560,125561,125562
1chd	203	71.35		
1gteA	1025	73.43	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	70440,70441,70442,70443,70444
1h4vB	421	73.55	c.51.1.1,d.104.1.1	60624,60625
2odsA	265	74.20		
3b42A	135	75.31		
2q7aA	152	76.79		
1jg1A	235	81.33	c.66.1.7	66661
1g63A	181	86.08	c.34.1.1	60299
1wznA	252	89.18	c.66.1.43	121525