# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j5aA	110	22.52		
2if6A	186	22.73		
1cqmA	101	27.62	d.58.14.1	39321
1f5aA	513	39.33	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1vmbA	140	41.26	d.58.14.1	113672
2otnA	308	42.50		
2elcA	329	47.87		
1qo0D	196	49.40	c.23.1.3	31125
1louA	101	50.54	d.58.14.1	39323
1udhA	244	54.12	c.18.1.1	31015
1im5A	180	58.97	c.33.1.3	66211
1yliA	153	59.10	d.38.1.1	123651
1ujrA	110	60.39	d.289.1.1	113258
1fa0A	537	63.70	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
2yufA	142	64.53		
1t4oA	117	74.51	d.50.1.1	106425
1rz3A	201	79.67	c.37.1.6	98132
1z6jT	211	82.14	b.1.2.1,b.1.2.1	124527,124528
1v84A	253	84.20	c.68.1.7	108419
2jh3A	474	85.28		
1yqtA	538	86.19		
2jhqA	226	89.92