# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	17.61		
1udhA	244	37.82	c.18.1.1	31015
1ujrA	110	39.39	d.289.1.1	113258
1fa0A	537	40.08	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1f5aA	513	40.93	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
2j5aA	110	48.42		
2otnA	308	54.98		
2elcA	329	55.44		
2yufA	142	56.18		
1cqmA	101	58.30	d.58.14.1	39321
1vmbA	140	67.94	d.58.14.1	113672
4eugA	229	71.57	c.18.1.1	31019
2baa	243	77.44		
2jhqA	226	79.91		
3cxmA	268	80.69		
1t4oA	117	85.97	d.50.1.1	106425
1im5A	180	88.48	c.33.1.3	66211
1qo0D	196	89.30	c.23.1.3	31125
1yliA	153	89.85	d.38.1.1	123651