# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	21.74		
2elcA	329	35.46		
2qzjA	136	41.26		
1hz6A	72	42.80	d.15.7.1	61429
2otnA	308	43.60		
2jhqA	226	44.89		
1i7qB	193	47.73	c.23.16.1	61902
1vmbA	140	50.92	d.58.14.1	113672
4eugA	229	53.69	c.18.1.1	31019
1fx2A	235	54.10	d.58.29.1	39430
1c96A	753	56.22	c.8.2.1,c.83.1.1	30727,35403
3cxmA	268	59.60		
1oj7A	408	60.27	e.22.1.2	103971
1f5aA	513	61.09	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
2j5aA	110	64.43		
1im5A	180	64.59	c.33.1.3	66211
1yqtA	538	66.34		
1cqmA	101	66.55	d.58.14.1	39321
2yufA	142	67.08		
2qxyA	142	69.63		
1wmhB	86	73.46	d.15.2.2	114745
1fa0A	537	73.58	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1yoeA	322	75.63		
1v84A	253	77.02	c.68.1.7	108419
1y63A	184	77.97	c.37.1.1	116494
1evyA	366	80.08	a.100.1.6,c.2.1.6	18811,30215
2q5cA	196	80.16		
2r31A	239	80.42		
3crnA	132	82.32		
1c7nA	399	83.56	c.67.1.3	34413
2gjlA	328	83.70		
1t71A	281	84.27	d.159.1.9	112283
2zayA	147	84.28		
3d0kA	304	85.46		
1bdo	80	86.07		
1udhA	244	88.24	c.18.1.1	31015
2ckwA	515	89.49