# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	13.50		
2otnA	308	31.30		
1b8iB	63	47.31	a.4.1.1	16011
1udhA	244	48.36	c.18.1.1	31015
1pufB	73	48.77	a.4.1.1	95132
1h8eA	510	49.53	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1w78A	422	53.04		
2j5aA	110	55.91		
1f5aA	513	59.99	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1yrnB	83	61.70	a.4.1.1	15986
1ujrA	110	64.31	d.289.1.1	113258
1z6jT	211	66.43	b.1.2.1,b.1.2.1	124527,124528
2v3vA	723	67.54		
2yufA	142	69.74		
1im5A	180	71.24	c.33.1.3	66211
1cqmA	101	71.50	d.58.14.1	39321
2rldA	121	72.62		
2elcA	329	76.66		
1vmbA	140	76.80	d.58.14.1	113672
2jhqA	226	79.78		
1rj9A	304	80.47	a.24.13.1,c.37.1.10	97553,97554