# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	12.14		
2otnA	308	28.61		
1w78A	422	31.31		
1h8eA	510	38.97	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1b8iB	63	39.78	a.4.1.1	16011
1pufB	73	41.02	a.4.1.1	95132
1udhA	244	41.89	c.18.1.1	31015
2j5aA	110	43.03		
2baa	243	46.46		
1yrnB	83	48.79	a.4.1.1	15986
1vmbA	140	56.30	d.58.14.1	113672
1cqmA	101	57.21	d.58.14.1	39321
2yufA	142	57.85		
1f5aA	513	65.85	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1t4oA	117	66.28	d.50.1.1	106425
2jhqA	226	68.01		
1z6jT	211	69.50	b.1.2.1,b.1.2.1	124527,124528
1umdB	324	71.58	c.36.1.7,c.48.1.2	99600,99601
1rj9A	304	72.41	a.24.13.1,c.37.1.10	97553,97554
1ujrA	110	72.82	d.289.1.1	113258
2elcA	329	73.38		
1b72B	87	75.73	a.4.1.1	16001
1im5A	180	79.18	c.33.1.3	66211
2rldA	121	80.09		
1evyA	366	80.25	a.100.1.6,c.2.1.6	18811,30215
1louA	101	80.92	d.58.14.1	39323
2v3vA	723	84.93		
1yliA	153	89.55	d.38.1.1	123651