# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	23.93		
1pufB	73	32.87	a.4.1.1	95132
1udhA	244	46.81	c.18.1.1	31015
1b72B	87	48.47	a.4.1.1	16001
2rldA	121	51.07		
2otnA	308	52.94		
2yufA	142	54.68		
1vmbA	140	58.41	d.58.14.1	113672
1b8iB	63	59.05	a.4.1.1	16011
1f5aA	513	61.26	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1yrnB	83	63.76	a.4.1.1	15986
1ru8A	232	66.57	c.26.2.1	97849
1cqmA	101	67.87	d.58.14.1	39321
2j5aA	110	73.50		
2sas	185	73.66		
1z0kB	69	76.82	a.2.19.1	124322
1psuA	140	84.38	d.38.1.5	88285
3cxmA	268	84.89