# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	10.42		
2otnA	308	21.55		
1w78A	422	23.75		
2elcA	329	32.47		
2j5aA	110	34.59		
1cqmA	101	36.69	d.58.14.1	39321
2q5cA	196	47.44		
2okmA	147	50.08		
1im5A	180	51.03	c.33.1.3	66211
1udhA	244	55.83	c.18.1.1	31015
1h8eA	510	58.63	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1z6jT	211	60.51	b.1.2.1,b.1.2.1	124527,124528
1vmbA	140	64.14	d.58.14.1	113672
1louA	101	65.16	d.58.14.1	39323
1evyA	366	65.28	a.100.1.6,c.2.1.6	18811,30215
1ujrA	110	68.86	d.289.1.1	113258
2df8A	325	71.51		
2v3vA	723	72.65		
1f5aA	513	72.74	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
2baa	243	80.75		
2qzjA	136	81.76		
1d2nA	272	82.80	c.37.1.20	32428
2vpzA	765	83.85		
1t71A	281	86.38	d.159.1.9	112283
1qo0D	196	89.30	c.23.1.3	31125