# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	10.07		
1w78A	422	10.16		
2otnA	308	17.55		
2j5aA	110	22.74		
1cqmA	101	32.10	d.58.14.1	39321
2elcA	329	32.64		
1udhA	244	39.44	c.18.1.1	31015
1vmbA	140	42.61	d.58.14.1	113672
1h8eA	510	44.31	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1d2nA	272	49.30	c.37.1.20	32428
1louA	101	51.17	d.58.14.1	39323
2v3vA	723	51.67		
1z6jT	211	52.10	b.1.2.1,b.1.2.1	124527,124528
1ujrA	110	53.00	d.289.1.1	113258
2q5cA	196	54.74		
2jhqA	226	58.78		
1im5A	180	67.19	c.33.1.3	66211
2baa	243	70.91		
1z0kB	69	71.12	a.2.19.1	124322
2yufA	142	74.17		
1evyA	366	75.08	a.100.1.6,c.2.1.6	18811,30215
1psuA	140	77.20	d.38.1.5	88285
1b8iB	63	77.83	a.4.1.1	16011
2okmA	147	80.19		
1f5aA	513	80.30	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1f6fB	210	83.11	b.1.2.1,b.1.2.1	22033,22034
3cxmA	268	85.72		
2hxmA	223	86.62	c.18.1.1	136857
1yliA	153	87.98	d.38.1.1	123651
2qzjA	136	88.80