# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t4oA	117	19.95	d.50.1.1	106425
2if6A	186	21.00		
1udhA	244	24.17	c.18.1.1	31015
2otnA	308	28.06		
1ujrA	110	34.99	d.289.1.1	113258
1f5aA	513	35.31	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1w78A	422	44.68		
1b8iB	63	45.87	a.4.1.1	16011
1fa0A	537	46.05	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1z6jT	211	51.04	b.1.2.1,b.1.2.1	124527,124528
1cqmA	101	51.37	d.58.14.1	39321
2j5aA	110	52.27		
1pufB	73	52.35	a.4.1.1	95132
4eugA	229	54.24	c.18.1.1	31019
2jhqA	226	54.67		
2baa	243	54.70		
1vmbA	140	55.10	d.58.14.1	113672
2yufA	142	55.70		
1yrnB	83	57.47	a.4.1.1	15986
3cxmA	268	66.10		
1rj9A	304	72.76	a.24.13.1,c.37.1.10	97553,97554
1vfgA	390	82.28	a.173.1.1,d.218.1.4	108570,108571
2booA	247	83.75		
2okmA	147	85.25		
1louA	101	87.41	d.58.14.1	39323