# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otnA	308	18.76		
2yufA	142	38.22		
2if6A	186	38.81		
1b8iB	63	47.43	a.4.1.1	16011
1z6jT	211	47.50	b.1.2.1,b.1.2.1	124527,124528
1t4oA	117	58.42	d.50.1.1	106425
2baa	243	58.49		
1ujrA	110	59.84	d.289.1.1	113258
1cqmA	101	61.15	d.58.14.1	39321
1pufB	73	62.56	a.4.1.1	95132
2jhqA	226	64.76		
4eugA	229	72.48	c.18.1.1	31019
1udhA	244	73.84	c.18.1.1	31015
1h8eA	510	75.23	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
3cxmA	268	78.32		
1fa0A	537	83.55	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1yqtA	538	84.55		
2j5aA	110	89.56